Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2640 ATGACTAGGAAGAAGGTGAAGCTAGAATTTATCGCAGACGATTCTTCAAGGAAAGCAACATTCAAGAAAAGGAAGAAGGGCATCTTGAAGAAAGTGAGTGAACTCACTATTCTATGTGGGATAGAGGCTTGTGCTATAATTTCCAACCCTTTTGACTCCCAAACAGATTTTTGGCCAAGTCTAGAGGGGGCGAAGCAAGTAATTGGTAAGTATCAAAGCTCATCAATAATTGATGAAAACAAGAATATGAATCGAAAGAGTTTCATGTTACAAAGGATTGCCAAAGCTGAGGACCAATTGAAGAAGCTACGTAAGGAGAATCAGGACAAAGAGTTACATCTATCTATATTTGAATATATGCAGGACAAAAAGCTTCTGGAGAATTTAACTATTGCAGAACTAAAAGATATCGACAAGCATATTGATCAAAATATGAAGGATATTGAAAACAAGATGGATGCACTTGATTGA 471 0.3652 MTRKKVKLEFIADDSSRKATFKKRKKGILKKVSELTILCGIEACAIISNPFDSQTDFWPSLEGAKQVIGKYQSSSIIDENKNMNRKSFMLQRIAKAEDQLKKLRKENQDKELHLSIFEYMQDKKLLENLTIAELKDIDKHIDQNMKDIENKMDALD* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2640 156 Coils Coil 138 156 - -
Aev06g2640 156 Gene3D - 13 123 IPR036879 GO:0003677|GO:0046983
Aev06g2640 156 Coils Coil 86 113 - -
Aev06g2640 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev06g2640 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev06g2640 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev06g2640 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev06g2640 156 PANTHER MADS BOX PROTEIN 2 154 - -
Aev06g2640 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Aev06g2640 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Aev06g2640 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Aev06g2640 156 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2640 Aev-Chr6 27582894 27583364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2640 3 155 Type I MADS-box Gene Family AT1G65300 38.961 2.68e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev06g2640 SRF-TF 5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2640 - - gmx:100792290 193.356