Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2617 ATGAGACCAAGGGACGGTGGGAGGAGGTGCTCGAGGTCGAGGGAGAAGAAGGCCGAGGGAGGAAAGCCTTCAGCCGCCGTGACCGAGGCCGAGGCAGAGGGAGGCGAGAGAAACAGCTTAGTCTCTTGGAAATTGGGTTTTGTCCATATGAAGTCCGCTACCAATATGGCTCAGGGACAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTCTACATTCATGATTATTTTGTGAAAAGAAAATTACATAACACAGCAAAAGCTTTTATGACAGAAGGAAAAGTTTCCACCGATCCAGTGGCAATTGATGCACCTGGAGGATTTCTTTATGAGTGGTGGTCTGTCTTTTGGGATGTCTTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCGGCTTACATTGAGACCCAGCAAATGAAGGCCAGAGAACAACAACTTCAAATGCAGCAAATGCAACTAATGCAGCAGCGCAGCGCACAGTTACAGCGACGAGATCCTGCTCTTGGTGGTTCCTTAAATGCCATGAACTCTGAAGGAATGTTGGGCCAACCACCAGCAAGTGTGTTGGCCATGAAAATGTATGAAGAACGCATGAAACACCCTCATTCAATGGAGTCAGAGGCATCTCCAACTCTTATCGATGCCAACAGGATGGCCCTTATCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCATGGTAATTCAGGAAATATGTCCACTGCATTGCAGCAACTTCAGGCCAGGGCTCCTTTGACTACTGACATTAAAGCAGAACCTAACTTAGGTGCCAGTCCAAAGAGTTTGCCTATGGATAATTCAGCTTATAGACAAGCAATTTTACAATCGAAATCTGGGATAGGCAGTGCAGGATTAAATCAAGGAGTAACAAGTCTTCCATTAAAGGGCTGGCCACTAACTGGAATTGATCAACTAAGACCTGGATTGGGTGTACAAATTCAGAAGCCTAATATGACACCCCAAAACCAGTTTCTTTTGGCATCACAACAGCAGCAAGTCTTGGCACAGACTCAGGCTCAAAGTAACCTTGGGAATTCTAATAGTCATGGTGATATGGATCCACGTAGACTTTCTGCTCTTTCTCGAGGTGGCTTAAGTGCGAAAGATGGCCAGTCTACCAGGAATGATGGATCTGTTTGCTCCCAAGTGCAGTCAGGTTCACCTAAGATGAAGATGGCCCAGGCTCAACATTCACTATCTCAACAGCAGGAGCACTCACAGCAGCAGCAACTGCAGCAGAATAACAGAAAAAGGAAACAACATTCTTCTTCTGGACCTGCCAATAGCACTGGTACCGGAAACACAGTAGGGCCTTCACCTAATTCACCACCATCAACTCACACACCTGGTGATGGAATAAATACAGCAAGCAGCATGCAGCATGCTAATAGTGTGCAAAAGAATATGATGATGTATGGTACAGATGGAACAGGAGGCCTTGCATCATCTTCAAATTTGCTTGACGACATGGAACGATTTGGAGATGTTGGTGCTTTAGAGGATAATGTGGAATCCTTTCTATCAAATGATGCAGGAGATGGTGGTAATCTCTATGGAACTATAAAACAAAGTCCAGCAGAGCAACCAAAAGAATCTTCAAAAGGTTTTACCTTTGCTGAATTTGGGTGCATAAGAACAAGGAACAGTAAAGTTACATGCTGTCACTTTTCTTCAGATGGTAAATTGCTTGCCAGTGCTGGACATGACAATAAGGTCGTCCTCTGGAACATGGACACTTTACAGACAGAGAGCACTCCTGAAGTACACAAGTCAGTTATTTCAGACGTCCGCTTTAGACCAAATTCATCTCAGTTGGCGACAGCCTCAATTGATAAATCCGTGCGATTATGGGATGCATCCAATCCGAGCTATTGTGTGCAAGAATATAGTGGGCACAGTTCAGCTATCATGTCTCTTGATTTCCACCCTAAGAAAACTGATCTTTTGTGCTTGTGTGATAGTGAAAATGAAATTCGGTATTGGAATACTACATCCTCCTCCTGCACCCATGTATTTAAGGGTGGTAATATACAAGTGAGGTTTCAGCCTAGAAGTGGGCATGTACTGGCTGCTGCTTCTGATGAAGTAGTATCAATTTTTGATGTTGAAGCTGACAGACAAATTTACTCATTCCAGGGACATCCTGAGGCGGTGAACTATATTTGCTGGGATGTGAATGGAGATTACTTGGCAACCGTGAGTCATAATTTGGTGAAGATTTGGGCACTGGGTTCAGGAGAATGCATTCAGGAGCTCGGCCCCACTACGAACCAGTTCCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTATTAGTCATCGGAGGGATTTCGTCCTTGGAGCTGTGGAACATGGCTGAGAACAAAAGCATGACAATATCTGCACATGAGAACATAATTTCTGCTTTAGCTCAGTCCCCTGTCACTGGAATGGTTGCTTCTGCAAGTCATGACTGCTCTGTTAAGTTGTGGAAATAA 2505 0.4431 MRPRDGGRRCSRSREKKAEGGKPSAAVTEAEAEGGERNSLVSWKLGFVHMKSATNMAQGQSNWEADKMLDVYIHDYFVKRKLHNTAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDVFISRTNEKHSEAAAAYIETQQMKAREQQLQMQQMQLMQQRSAQLQRRDPALGGSLNAMNSEGMLGQPPASVLAMKMYEERMKHPHSMESEASPTLIDANRMALIKSATSHQGQLVHGNSGNMSTALQQLQARAPLTTDIKAEPNLGASPKSLPMDNSAYRQAILQSKSGIGSAGLNQGVTSLPLKGWPLTGIDQLRPGLGVQIQKPNMTPQNQFLLASQQQQVLAQTQAQSNLGNSNSHGDMDPRRLSALSRGGLSAKDGQSTRNDGSVCSQVQSGSPKMKMAQAQHSLSQQQEHSQQQQLQQNNRKRKQHSSSGPANSTGTGNTVGPSPNSPPSTHTPGDGINTASSMQHANSVQKNMMMYGTDGTGGLASSSNLLDDMERFGDVGALEDNVESFLSNDAGDGGNLYGTIKQSPAEQPKESSKGFTFAEFGCIRTRNSKVTCCHFSSDGKLLASAGHDNKVVLWNMDTLQTESTPEVHKSVISDVRFRPNSSQLATASIDKSVRLWDASNPSYCVQEYSGHSSAIMSLDFHPKKTDLLCLCDSENEIRYWNTTSSSCTHVFKGGNIQVRFQPRSGHVLAAASDEVVSIFDVEADRQIYSFQGHPEAVNYICWDVNGDYLATVSHNLVKIWALGSGECIQELGPTTNQFHSCVFHPSYSTLLVIGGISSLELWNMAENKSMTISAHENIISALAQSPVTGMVASASHDCSVKLWK* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2617 834 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 630 IPR001680 GO:0005515
Aev06g2617 834 ProSitePatterns Trp-Asp (WD) repeats signature. 614 628 IPR019775 -
Aev06g2617 834 ProSiteProfiles LIS1 homology (LisH) motif profile. 65 97 IPR006594 GO:0005515
Aev06g2617 834 MobiDBLite consensus disorder prediction 1 33 - -
Aev06g2617 834 CDD WD40 557 834 - -
Aev06g2617 834 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 553 588 - -
Aev06g2617 834 ProSiteProfiles Trp-Asp (WD) repeats profile. 802 834 IPR001680 GO:0005515
Aev06g2617 834 MobiDBLite consensus disorder prediction 1 22 - -
Aev06g2617 834 SMART Lish 65 97 IPR006594 GO:0005515
Aev06g2617 834 ProSitePatterns Trp-Asp (WD) repeats signature. 572 586 IPR019775 -
Aev06g2617 834 Gene3D - 531 685 IPR015943 GO:0005515
Aev06g2617 834 PRINTS G protein beta WD-40 repeat signature 572 586 IPR020472 -
Aev06g2617 834 PRINTS G protein beta WD-40 repeat signature 614 628 IPR020472 -
Aev06g2617 834 PRINTS G protein beta WD-40 repeat signature 821 834 IPR020472 -
Aev06g2617 834 SUPERFAMILY WD40 repeat-like 551 834 IPR036322 GO:0005515
Aev06g2617 834 MobiDBLite consensus disorder prediction 374 466 - -
Aev06g2617 834 MobiDBLite consensus disorder prediction 351 466 - -
Aev06g2617 834 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 802 834 - -
Aev06g2617 834 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 594 IPR001680 GO:0005515
Aev06g2617 834 Pfam LisH 67 93 IPR006594 GO:0005515
Aev06g2617 834 Pfam WD domain, G-beta repeat 593 627 IPR001680 GO:0005515
Aev06g2617 834 Pfam WD domain, G-beta repeat 558 585 IPR001680 GO:0005515
Aev06g2617 834 Pfam WD domain, G-beta repeat 634 671 IPR001680 GO:0005515
Aev06g2617 834 Pfam WD domain, G-beta repeat 716 750 IPR001680 GO:0005515
Aev06g2617 834 Pfam WD domain, G-beta repeat 798 834 IPR001680 GO:0005515
Aev06g2617 834 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 595 630 - -
Aev06g2617 834 SMART WD40_4 546 585 IPR001680 GO:0005515
Aev06g2617 834 SMART WD40_4 795 834 IPR001680 GO:0005515
Aev06g2617 834 SMART WD40_4 713 751 IPR001680 GO:0005515
Aev06g2617 834 SMART WD40_4 674 710 IPR001680 GO:0005515
Aev06g2617 834 SMART WD40_4 754 793 IPR001680 GO:0005515
Aev06g2617 834 SMART WD40_4 588 627 IPR001680 GO:0005515
Aev06g2617 834 SMART WD40_4 631 671 IPR001680 GO:0005515
Aev06g2617 834 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 60 834 IPR044716 GO:0003714
Aev06g2617 834 Gene3D - 686 834 IPR015943 GO:0005515
Aev06g2617 834 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 680 IPR001680 GO:0005515
Aev06g2617 834 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 60 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2617 Aev-Chr6 27281850 27293688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2617 632 833 Miscellaneous Gene Families AT5G08390 22.705 1.14e-10 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aev06g2617 WD40 0.0065 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2617 - - qsu:111995984 1210.28