Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2486 ATGGGAGTCCACGGTCTCTGGGAACTACTCGCCCCCGTAGGCCGCCGCGTCTCCGTCGAGACTCTCGCCGGAAAAACCCTCGCCGTTGATGCGAGCATATGGATGGTGCAATTCATGAAGGCGATGCGTAACGAGAAGGGCGAAATGGTTCGCAACGCTCACTTGCTTGGCTTTTTCCGTCGAATTTGCAAGCTCTTGTTCCTCCGGACCAAGCCGGTCTTCGTCTTTGATGGCGGAACCCCCGCCCTCAAGCGCCGCACTGTCATCGCCCGTCGCCGGCAGAGGGAGAACGCTCAGGCCAAAGTCCGCAAGACTGCCGAGAAATTGCTTTTCAATCACCTAAAGACATTGAGGTTGAAAGAGCTGGCTGACGATATCAAGAACCAGAGACTGAAGCAGAAGAGTGATACCAAGGGACCAAAAGAACCTGATCAGCTGCAGTCTATTGATAGTGATTTAGGGATAAGTGATGTGAAAGATCAAAATGAAATGTCTGCAGCTAAATTTGCAGCTACAGAAGAAAGAGACATATTGCAAGCAAAAAGATCAAGAAGTCAGAATCAGGAGGAGCTTGATGAAATGTTGGCAGCATCTATAGTTGCAGAGGAGAATGGATTACTAGCCAGGAAAGATGTGGCATCTACTGTAGTTAATACTTCAGATGATAACTGTGATGCAGATGAAGAAATGATACTGCTGTCCAGCCATGCTGATGTAGATTTAGCTGTTTTAGCTGCTTTGCCTCAGTCAATGCAATTTGATATTCTTGCACAGCTCAAGGGAAAGAAAACTGAAGCACCAGTGAAGGATGTTGAAAACCAGAAACAGCTTAAGGACAAGGGTAAGGGGGTTCTTCTGTTTACTGAAACTGACATGTCAGGCTGTAGTTCAAGATGTGACAATGTGACATCAAGTCATAAGAATCAAGATAAAATTGATGAAATGTTAGCTGCATGTATTGCTGAGGAGGAAAATGCAAAGTCATTGAATAATGCATCAACGTCTCTTGGGGCTTCCACCTTTGAGGAAGAGGATGGTGACTACGACGAAGATGAAGCGATGATATTGCCTGCAATGGATGGTGAAGTTGATCCTGCTATTCTAGCCTCGTTGCCTCCATCGATGCAACTGGATCTCCTGGTTCAGATGAGAGAGCGCTTGATTGCAGAGAATAGACAAAAGTATCAAAAAGTAAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGAAGGGAGATAGATGAAGTACAAAAAGCTGCAGCTGGTCGAGGTGTAGGTGGTGTACAAACTTCACGGATTGCATCTGAAGCCAACAGAGAGTATATATTCTCATCATCTTTCACTGGTGACAAACAAGAACTTACATCCACTAGAATGGAGAAAAATGATGATACTCATCAAAAGGCACGGGGAACACATCCTTTGGAGAATTTCGCTAATATTATTGCAGTAGGCAATGATTCGAATCCTTCAAGTGGGTTGGTTTGCAATGAACCTAGTGAGTCTGTCGACGAAAGTATTCAGACATATCTAGATGAGAGGGGTCGATTTCGAGATAGTAGATTGAGAGCTTTGGGGATGCGTATGACCCGTGACATACAAAGAAATTTGGATTTGATGAAGGAGATTGAGCAACAGAAAACATATGTGAACAAAGCTGCAAATATTGACACAGTGCTGAATGCAGAGAATTCTGGTCCGTCAGAAAGCTCTGGGACCAAGCTTGTCAGTAGAACACAAGAGATGAATGTAGACTCTGTTCATGAGAGTGTGCAAAATGAGCACTCCATCCTTGACAGGGATACTTCTATAGAGATATCCTTTGAATATGATAGCAAGAATATGATTACTGATGGTGAGGATGATATATTTGCTAGTTTAGTAGGAGGAAGTTCACAGACAATCTTATATGCTAATGCTATTGCAGCAAAAGAAAAACATTCAGATTCAGATTGTGATTGGGTAGAAGGAGTTGTTGAATGTCAGGATACCATTGTTCCTGAAGATAAGGTTGAGTGTAAGTCTTCTGCAGCAGAACAGGATAATAATGATGAGAGTGAAGTGGAATGGGAGGAAGGGGATTGTGATGGTGCTAAAAATACCTTATGCCATCCATATGAGTCAGCAAGAAAGACTTCTCAAGGGCACTTGGAGGAGGAGTTGAATTTACAGGAGGCACTTAGGAGAAGTCATGAGAGTATAGGGGATGGGGAGCATAAGTGCATACCCTCCATAGATGGGGATTCAAATGCTAAGAACAAATTGGATCATGGGTTGGTCCTAGGTGATGATTTGGCTTTTTCTGGCTCAATGGATTTAAATGATAAAGATGTATTTCTGACTAACAAAAATAGTATGGGCGGTTCAACTTTGCATAGGGAAGAGAGTATTGAACAAAATAAACTGCATGAAAATTTAGATGGGGATGGAAGACATGATAATTTGGCAAGAAATATTACCCAAATTTGCCATTTTCCTGAGAGTCAGTCCAAGTCATACATGGCCTCCATTTCAAATAACCTGGAGATTCTGATTGACAAACCTTGCTTACAGGATAGATGTGCTCACTCTGAATATTCAACTTCAGATACAAATTTTATGATAAAGGACAATGTTGATATGGATGCAGAGCAACTATTTGATAAACATTATGATGATGCCAAAGAGTTTTTCGATGGTAACAATTCGTCGAAGGTTGTTCCCCTTGCCGCGACTGGAGAGGAGAAAACTAGTGATCATTATGAATCTGAACCATTGAGTAATTCTGCTGACAATACCAAGACTGCTATTCCTTTGTTTGAGACATCAATGAAAGCATCAACAGAAAACCTTGACAACAAGCCGAAGTTTGCTGAAGTGGACAGTGTAGGAAATTTCAGCAGAGGGAGTAGCAACCTTGCGAAAGATGCAGTGAACACCTCAGGGGATTTTGCTGCACATGTAGCTGAGGTTGATTTGGATGAAGAAATGCGAAAGCTTGGTCAAGAATATATCAGCCTAGAAAGTGAGCAGAGGAAGTTTGAACGTAATGCTGAATCTGTAAACAGTGAATTATTCACAGAATGTCAGGAACTACTACAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCTGAAGCACAGTGTGCTTTCTTGGAACATATAAAACTGGTTGATGGTGTTGTAACCGATGATTCTGATGTCTTCTTATTTGGGGCTCGTAGTGTTTACAAGAATATATTTGATGACCGCAAGTATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGATTGACCAGAGAAAAGTTAATACGCATGGCACTACTTCTTGGCAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTCAATGCTATTGAGGTTGTGAATGCATTTCCTGAGGATGATGGCCTTTTGAAATTTCGGCAGTGGGTTGAATCGCCAGATCCCACCATTCTTGGAAGGTTAAATCCAAACAGTGGATCCAATACTAGAAGGAAAGGGTCAAAAGTTGAAGAAAAGATAAATGAGCCAAATCACAATATTGAAGAGCCTGTACCAGATCAAATTACCAATCATCAGGAGCAAAGGGCATCTCCAGATTACAATCAAGAAATTAAGCAAACCTTTATTGAGAAGCATAGAAATGTGAGCAAGAATTGGCATATCCCTTCTTCTTTTCCCAGTGATATGGTTATATCTGCTTACTATTCCCCACAAGTTGACAAGTCAACTGATCATTTCACTTGGGGGAAGCCAGATCATCTCGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACTAGTCAGAAAGCAGATGAGTTGCTGTTGCCTGTTTTAAAGGAATATAACAAACGTGAGACTCAACTGCGTCTGGAAGCATTTTATAGTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCTGTAAAAGGAATCACTGGTAAGCAGCCTTCAGGGTTGATGGATGATTCCAGGAGTTCAAAGAGCGGGAGAGGAAGTCTTGTAGAACCAGGGGATAACAACTTGGAGAATTTAAAGGGACAAGAGGAAAGTCTTGAAGGTAGGAAGAAACCTGACGTGAAGCAATCAAGAAAAAGGAAGAATGAAGGGGATACTGTTGATACGGCACTGTCAATGAGAAAGAAAATCGCTGATGATCCTTTCTTAGATCCCAGTACATCTGGGGTGGAGAATTCACAGCCATCTAAACAGACAGAAAAAGACCAATGTGATGGTAAGGTATTGATTGAGAATAGAAGTGGCAGAGGTAGAGGTAGAGGAAGAGGACGAGGACGAGGTAGAGGTTTGGGAGTAAAACAAGGAAGGGAAAAGGAAAGTCTTATTTCTCAATCGTATGAAAGCTCATCTGGTAGTAGTGATGCTGATGATTGTGGGCCAAGAGTGCTTGTTGATGTGCCAAAAGTTCCTCAAGAGGTGCGAAGGTCAATCCGGTCTCGTAAACCTGTCAACTATTTTGAAAAGAATGAAGTTGAAGATGCCAATGATTTTGATCAGCACAACCAGACATCCTTGAGTGAAGAGGCAATAGAAGAAAATTCATCTTATATTCATGGTGCACGTGGAGATGTTGCAACTGATCTCAGCAGAGATGAAGAAAGTCATGTAATACATAGTCCTCCAAATGACAACTGGCCTAAACACTATCTTGACTCAGAAAGTTGGTTTTGCACAGATGCTGGTGAGGCTAGTCATCCTGATATTACCTCTACTGCTGGCGCTTCTGAAGATTACCTTAAATCGGGAGGTGGTTTTTGTTTAGATGATACCGATGTACATGACAACCATAATGAAAATGATGGTGGCGATAATGCTACGGTGGATGACACTGAAGATTATCCACACGGTTCTGTTATGTTGAATGAGACTGACCGTGATAAAAACAGTTCAGATATATTGTTTTCTGGCGCTGAAAAAGCTGACAATGAGATGCAAGAGGGAGGGCCTGCTTCTGAAGTCGATAAGGAGCCAAACCTTCAAAATCCAAGTTATGATCAATCTGAGATGGAGGTCTTGGCACTAAAGATTGCTGATCATAATAGTGAAAGCTACACTGGAGCTTTTAGAGCAATGCCGTTTTTGAGGAAAAGGAAGAAGAACTAA 5166 0.4179 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRNEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLFNHLKTLRLKELADDIKNQRLKQKSDTKGPKEPDQLQSIDSDLGISDVKDQNEMSAAKFAATEERDILQAKRSRSQNQEELDEMLAASIVAEENGLLARKDVASTVVNTSDDNCDADEEMILLSSHADVDLAVLAALPQSMQFDILAQLKGKKTEAPVKDVENQKQLKDKGKGVLLFTETDMSGCSSRCDNVTSSHKNQDKIDEMLAACIAEEENAKSLNNASTSLGASTFEEEDGDYDEDEAMILPAMDGEVDPAILASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRMEKNDDTHQKARGTHPLENFANIIAVGNDSNPSSGLVCNEPSESVDESIQTYLDERGRFRDSRLRALGMRMTRDIQRNLDLMKEIEQQKTYVNKAANIDTVLNAENSGPSESSGTKLVSRTQEMNVDSVHESVQNEHSILDRDTSIEISFEYDSKNMITDGEDDIFASLVGGSSQTILYANAIAAKEKHSDSDCDWVEGVVECQDTIVPEDKVECKSSAAEQDNNDESEVEWEEGDCDGAKNTLCHPYESARKTSQGHLEEELNLQEALRRSHESIGDGEHKCIPSIDGDSNAKNKLDHGLVLGDDLAFSGSMDLNDKDVFLTNKNSMGGSTLHREESIEQNKLHENLDGDGRHDNLARNITQICHFPESQSKSYMASISNNLEILIDKPCLQDRCAHSEYSTSDTNFMIKDNVDMDAEQLFDKHYDDAKEFFDGNNSSKVVPLAATGEEKTSDHYESEPLSNSADNTKTAIPLFETSMKASTENLDNKPKFAEVDSVGNFSRGSSNLAKDAVNTSGDFAAHVAEVDLDEEMRKLGQEYISLESEQRKFERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAFLEHIKLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEDDGLLKFRQWVESPDPTILGRLNPNSGSNTRRKGSKVEEKINEPNHNIEEPVPDQITNHQEQRASPDYNQEIKQTFIEKHRNVSKNWHIPSSFPSDMVISAYYSPQVDKSTDHFTWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQPSGLMDDSRSSKSGRGSLVEPGDNNLENLKGQEESLEGRKKPDVKQSRKRKNEGDTVDTALSMRKKIADDPFLDPSTSGVENSQPSKQTEKDQCDGKVLIENRSGRGRGRGRGRGRGRGLGVKQGREKESLISQSYESSSGSSDADDCGPRVLVDVPKVPQEVRRSIRSRKPVNYFEKNEVEDANDFDQHNQTSLSEEAIEENSSYIHGARGDVATDLSRDEESHVIHSPPNDNWPKHYLDSESWFCTDAGEASHPDITSTAGASEDYLKSGGGFCLDDTDVHDNHNENDGGDNATVDDTEDYPHGSVMLNETDRDKNSSDILFSGAEKADNEMQEGGPASEVDKEPNLQNPSYDQSEMEVLALKIADHNSESYTGAFRAMPFLRKRKKN* 1722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2486 1721 Pfam Ubiquitin binding region 237 258 IPR025527 -
Aev06g2486 1721 Pfam Ubiquitin binding region 361 387 IPR025527 -
Aev06g2486 1721 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 263 - -
Aev06g2486 1721 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 258 1720 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 130 145 - -
Aev06g2486 1721 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 258 1720 - -
Aev06g2486 1721 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 263 - -
Aev06g2486 1721 CDD H3TH_XPG 1109 1252 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1361 1402 - -
Aev06g2486 1721 SMART xpgn3 1 98 IPR006085 GO:0004518
Aev06g2486 1721 Coils Coil 993 1027 - -
Aev06g2486 1721 SUPERFAMILY PIN domain-like 2 1121 IPR029060 -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1459 1476 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1639 1653 - -
Aev06g2486 1721 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Aev06g2486 1721 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1106 1314 IPR036279 -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1614 1685 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 682 703 - -
Aev06g2486 1721 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Aev06g2486 1721 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Aev06g2486 1721 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Aev06g2486 1721 ProSitePatterns XPG protein signature 2. 1040 1054 IPR019974 GO:0016788
Aev06g2486 1721 SMART xpgineu 1037 1106 IPR006086 GO:0004518
Aev06g2486 1721 MobiDBLite consensus disorder prediction 916 936 - -
Aev06g2486 1721 Gene3D - 1 156 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1194 1208 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1419 1439 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1334 1349 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1175 1190 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 130 153 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1324 1485 - -
Aev06g2486 1721 Gene3D - 1106 1160 - -
Aev06g2486 1721 SMART HhH_4 1108 1141 IPR008918 GO:0003677|GO:0003824
Aev06g2486 1721 CDD PIN_XPG_RAD2 1023 1107 - -
Aev06g2486 1721 Gene3D - 972 1105 - -
Aev06g2486 1721 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Aev06g2486 1721 Pfam XPG I-region 1040 1121 IPR006086 GO:0004518
Aev06g2486 1721 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Aev06g2486 1721 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1161 1208 - -
Aev06g2486 1721 MobiDBLite consensus disorder prediction 1511 1538 - -
Aev06g2486 1721 CDD PIN_XPG_RAD2 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2486 Aev-Chr6 25406053 25418237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2486 1016 1138 Core DNA Replication Machinery Family AT5G26680 33.333 1.71e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2486 K10846 - gmx:100820295 2111.26