Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2430 ATGGTTAAAAAGAGAGACATCACCACATACATTTCAAATGATGCAAAGAGGAAGGCAACCTTGAGGAAAAGAAAAAATGGTCTTTTCAAGCATATTAATGAGCTTACCACCCTTTGTGGAATTGAAGCTTGTGCTATCATCCAAAGTCCTAATGAACCTCAACCTGCTGAAGTTTGGCCATCCCCTTCAGGAGCTACAAGGGTGATCTCCAAGTTCGTCGAATTACCGGAATCGTTTCAAAATAAGAACATGTTAACTCAAGAGAGCTTCTTGATGGAAAGGATCAAGAAGGTTGAAGATCATCTGAAGCAACAAATGATTGAAAAAAGGAAGAAAGAGTTGCACAATCTTATGATCCATTGCTTGGAAGATGGCCAGGTCCCTGAAAATACCAATATGGAAGATCTCATTGATCTATCATATTTTATTGATCACAACATTATGCAGATTGATTTGAGGTTGAATACTAGGACCGGAGGCCAAGAGGGGCCTTCATATATGGAGCATTAA 510 0.3922 MVKKRDITTYISNDAKRKATLRKRKNGLFKHINELTTLCGIEACAIIQSPNEPQPAEVWPSPSGATRVISKFVELPESFQNKNMLTQESFLMERIKKVEDHLKQQMIEKRKKELHNLMIHCLEDGQVPENTNMEDLIDLSYFIDHNIMQIDLRLNTRTGGQEGPSYMEH* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2430 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Aev06g2430 169 PANTHER MADS BOX PROTEIN 9 160 - -
Aev06g2430 169 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Aev06g2430 169 CDD MADS_SRF_like 3 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aev06g2430 169 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Aev06g2430 169 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 160 - -
Aev06g2430 169 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Aev06g2430 169 SUPERFAMILY SRF-like 9 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2430 Aev-Chr6 24428761 24429270 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2430 1 162 Type I MADS-box Gene Family AT5G48670 45.399 1.04e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev06g2430 SRF-TF 4.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2430 - - adu:107462715 169.859