LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev06g2428	ATGGCTAGGAAGAAGGTGGACATCAAGTACATAGCTGATGGTGCAAAGAGGAAGGCATCATTCCAGAAAAGGAGGAGTGGTTTGATCAAGAAGGTGCATGAGATCTGCACCCTTTGTGATGTTGAAGCATGTATTGTTATCTTCAGCTCCAACAAATCTGAGGAGCCTGTGGTGTGGCCATCCCGTTCCGGCGTCGAGTCGGCGAGAACCAAGTTCTTGGAAATGCCTGATGAAGAGCAGAGCAAGAAGATGGTGAATCAAGAGACTTACTTGACTCAACAGGTGGAGAAGAGTCAGGACAAGGTGGAGAAACTAAGGAGTGAAAACAGGAAGAAAGAGATGAACAATCTCATGATTCAATGTCTTGTTGGTGATCATTCCATCCTTAACACGGCAACTATGGTTGATCTTAATGATCTCACATGGGTGATTAACCACAACCTCATGAAGATCAACAATAGACTCAGTAATCTGGAAGCTCATCAAGAGGAAGCTTCGAATTCAAACTTGAATGGAATGGATGTCTACAATGGAGATGAAGTGCAACATTCATTTGGGGATTTTAATAATAATACTAATAATAATAATAATAATAACAATCTCCAAAATGATGACTACTATGTGCCTGCTGTCCCGGTATTCAGCCCTTGA	651	0.4194	MARKKVDIKYIADGAKRKASFQKRRSGLIKKVHEICTLCDVEACIVIFSSNKSEEPVVWPSRSGVESARTKFLEMPDEEQSKKMVNQETYLTQQVEKSQDKVEKLRSENRKKEMNNLMIQCLVGDHSILNTATMVDLNDLTWVINHNLMKINNRLSNLEAHQEEASNSNLNGMDVYNGDEVQHSFGDFNNNTNNNNNNNNLQNDDYYVPAVPVFSP*	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev06g2428	216	CDD	MADS_SRF_like	2	86	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Aev06g2428	216	SUPERFAMILY	SRF-like	3	95	IPR036879	GO:0003677\|GO:0046983
	Aev06g2428	216	MobiDBLite	consensus disorder prediction	183	205	-	-
	Aev06g2428	216	ProSiteProfiles	MADS-box domain profile.	1	51	IPR002100	GO:0003677\|GO:0046983
	Aev06g2428	216	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL80	1	194	-	-
	Aev06g2428	216	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Aev06g2428	216	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Aev06g2428	216	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Aev06g2428	216	MobiDBLite	consensus disorder prediction	181	206	-	-
	Aev06g2428	216	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	52	IPR002100	GO:0003677\|GO:0046983
	Aev06g2428	216	Coils	Coil	95	115	-	-
	Aev06g2428	216	Gene3D	-	13	98	IPR036879	GO:0003677\|GO:0046983
	Aev06g2428	216	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	194	-	-
	Aev06g2428	216	Coils	Coil	148	168	-	-
	Aev06g2428	216	SMART	madsneu2	1	61	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev06g2428	Aev-Chr6	24401333	24401983	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev06g2428	1	158	Type I MADS-box Gene Family	AT5G48670	42.405	4.84e-36	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Aev06g2428		SRF-TF	8.8e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev06g2428	-		-	aip:107644294	193.741