Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2425 ATGGCAAGAAAGAAGGTGGCACTCAAGTATATAGTGAATGATGCAAAGAGGAAGACATCATTGAAGAAAAGGAAGAGCAGTTTGATCAAGAAGGTTTATGAGATCACCACTCTCTGTGGGGTTGAAGCTTGTGCTATTATTCATGCTCCTGATGATGAATCTCAGACAGAGATTTGGCCATCACCTTCAGGGGCCAGAAGGGTGATTTCCAAATTTCTTCAGATGCCTGAAGTGGAGCAAAACAGGAAGATGTTTACTCAAGAGACTTACTTGGAGAAAATGATTCAGAAGACTCATGAACAAGTGAAGACACTGAGAACAGAGAACAGGAAAAAAGAGATGAACATTCTCATGTTCCATTGCCTAAGTGGTGGTGATGAAGCATTCTTGGACAATGCCACAATTATTGATCTCAATGATCTTGCTTGGGTGATTGACCATAACCTTAAGGAGATCATTACAAGGATTAATATGCTAGAGGTTGGAGAGGGGACTTCCAATGAAGGGGCAGCCATCAATGGAGAGCAGGAGGAAGAACAGGGGGAAGCCATGGAAAAGCAACCTTGTCTTGTCAATGATGATGAGGTGCAACCAGTTGGAGATGTTGTTAATAATCCATGA 621 0.4219 MARKKVALKYIVNDAKRKTSLKKRKSSLIKKVYEITTLCGVEACAIIHAPDDESQTEIWPSPSGARRVISKFLQMPEVEQNRKMFTQETYLEKMIQKTHEQVKTLRTENRKKEMNILMFHCLSGGDEAFLDNATIIDLNDLAWVIDHNLKEIITRINMLEVGEGTSNEGAAINGEQEEEQGEAMEKQPCLVNDDEVQPVGDVVNNP* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2425 206 Coils Coil 95 115 - -
Aev06g2425 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 173 - -
Aev06g2425 206 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Aev06g2425 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Aev06g2425 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev06g2425 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev06g2425 206 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 173 - -
Aev06g2425 206 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Aev06g2425 206 MobiDBLite consensus disorder prediction 166 206 - -
Aev06g2425 206 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Aev06g2425 206 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Aev06g2425 206 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2425 Aev-Chr6 24367124 24367744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2425 1 174 Type I MADS-box Gene Family AT5G48670 46.927 2.16e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev06g2425 SRF-TF 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2425 - - aip:107644294 194.126