Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2336 ATGAGAGAAAGCCCTGGGTTGTTGATACTCGATGAAGGGCACAATCCAAGGAGTACCAAATCGAAGCTTAGGAAAGTTCTAATGACAGTAAAGACAGAGCATAGAGTTTTATTATCAGGTACATTATTTCAGAACAATTTTTGCGAGTACTTCAACACGTTGTGCTTGGCGAGGCCAAAGTTTATCCAAGAAGTGTTGAATGAACTAGACACCAAGTACGAGAAGCACAAGGTAGTAGAGAAAGCACCACATTTGGTTGAGGCGCGTGCTTGGAAGTTCTTCTTAGACAAAATTGGCAAGATAATTAATTCAAAGGATGATGAATCTTTCGTTAGTGAAGAGAGTATACAAAGTATAAACTTGTTGAAAAAGCTTACAAGTGGTTTCATTGATGTTTATGAAGGTGCCAACCATGACACAATCTCAGGTTTGAAAATTTATACTTTGCTGATAAACACGACTGATGTACAAAAGAAGATTCTATACAAACTTCACAAGAAAATGGCAGAGTATGATAGTTACCCTTTGGAGATAGAACTTCTGATAACACTTGGATCAATACATCCATGGCTGATTACAAAAGCAACATGTTCTTCTAAGTTCTTTTCTTATAAGCAAGTAATGGAGCTGGATAATTACAAGTATGATTTAAGGATAGGAACAAAAGTCAAATTTGTTATGAGCCTTGTCCACAGAGTTTTCAAAGAGGAGAAAGTTCTCATATTCTGCCATAACATTGCACCTATGAAGATGCTATTGGAACAATTTGAGAAGATTTTCAAGTGGAAAAAAGACAAAGAGGTTATGGTAATAACTGGTGCACTTGAGCTTTTTGATAGAGGGAGAGTGATAGATAAGTTTGAAGACCCTTATGGTGAATCAAAGGTGTTACTTGCTTCGATCATAGCTTGCGCAGAAGGGATTAGTCTCACTGCAGCATCAAGGGTTATTATGTTGGATACAGAGTGGAACCCATCAAAGACTAAGCAAGCTATTGCAAGGGCTTTTAGGCCTGGCCAGCAGAAGATGGTTTATGTGTATCAGTTAATTGCTACAAATTCTGTTGAGGAAGATAAGAACAAGACAAACACTTGGAAAGAGTGGGTTTCTAACATGATTTTCAACGAGGAAGTTGTGGAACCTTCCCAATCTCAAGCACAAAATATTGAGGATGAGGTTCTTAGGGTGATGGTTGAGGAGGACAAGTCTAAGGTATTCCATAAGATCATGACAATGAACATGGAAAAGCCTACTGATGACTCACCTTGA 1269 0.3806 MRESPGLLILDEGHNPRSTKSKLRKVLMTVKTEHRVLLSGTLFQNNFCEYFNTLCLARPKFIQEVLNELDTKYEKHKVVEKAPHLVEARAWKFFLDKIGKIINSKDDESFVSEESIQSINLLKKLTSGFIDVYEGANHDTISGLKIYTLLINTTDVQKKILYKLHKKMAEYDSYPLEIELLITLGSIHPWLITKATCSSKFFSYKQVMELDNYKYDLRIGTKVKFVMSLVHRVFKEEKVLIFCHNIAPMKMLLEQFEKIFKWKKDKEVMVITGALELFDRGRVIDKFEDPYGESKVLLASIIACAEGISLTAASRVIMLDTEWNPSKTKQAIARAFRPGQQKMVYVYQLIATNSVEEDKNKTNTWKEWVSNMIFNEEVVEPSQSQAQNIEDEVLRVMVEEDKSKVFHKIMTMNMEKPTDDSP* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2336 422 SMART helicmild6 254 339 IPR001650 -
Aev06g2336 422 CDD SF2_C_SNF 214 350 - -
Aev06g2336 422 Gene3D - 145 420 IPR027417 -
Aev06g2336 422 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 225 390 IPR001650 -
Aev06g2336 422 Pfam Helicase conserved C-terminal domain 222 338 IPR001650 -
Aev06g2336 422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 383 IPR027417 -
Aev06g2336 422 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 1 412 - -
Aev06g2336 422 Pfam SNF2-related domain 8 72 IPR000330 GO:0005524|GO:0140658
Aev06g2336 422 Gene3D - 1 92 IPR038718 -
Aev06g2336 422 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 412 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2336 Aev-Chr6 22900903 22902171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2336 268 357 RAD5 or RAD16-like Gene Family AT5G05130 42.857 1.18e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev06g2336 Helicase_C 2.3e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2336 K10875 - jre:108991882 573.933