Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2183 ATGTCATCAACATCAACTGAAGCAATACATTATTGGTGTTACGCATGCAATGAACCAATCATGCTTATTGAATTGGGAGATGCCTTTTGCCCATATTGTTATGAAGGCTTCGTACAAGAACTCCATAATCAGATTCATTCTCCTCATCCTCCTTCTCGACATCATGTGCATGTTGATTCCGGTGACTACTTTACGGGCCCGGGATTGGAAGAGCTTATTGAACAACTAAGTATGGATGATCAAAATACTACTAGTGGTGGTCCTACCCCGGCACCATCTTCTTCGATTAATGCGATGCCTACTATTAAGATCACTCGTTCACACCTTCACTCTGATTCCAAATGTCCAATTTGTCAAGAAGATTTTGAGTTTGGGTCTGAGGCCAAGGCTATGCAATGTAACCATATTTTCCACTCGGATTACATTGCTCTTTGGTTAGCACAACATAACTCGTGTCATGTCTGTCGTGTCCAGCTCCCACCTCCTTGA 489 0.4254 MSSTSTEAIHYWCYACNEPIMLIELGDAFCPYCYEGFVQELHNQIHSPHPPSRHHVHVDSGDYFTGPGLEELIEQLSMDDQNTTSGGPTPAPSSSINAMPTIKITRSHLHSDSKCPICQEDFEFGSEAKAMQCNHIFHSDYIALWLAQHNSCHVCRVQLPPP* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2183 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 55 161 - -
Aev06g2183 162 Pfam Ring finger domain 114 156 IPR001841 -
Aev06g2183 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 162 IPR013083 -
Aev06g2183 162 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Aev06g2183 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 44 - -
Aev06g2183 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 10 44 - -
Aev06g2183 162 SUPERFAMILY RING/U-box 95 161 - -
Aev06g2183 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2183 Aev-Chr6 20501684 20502172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2183 3 159 C3H Transcription Factor Family AT1G68180 29.240 2.68e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2183 K11982 - gmx:100813674 154.836