Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2182 ATGATGTCAAGTGGAGCAACAACACACTGGTGTTACACATGCAATGAGCCAATCATGCTTGAATGGGAAAATGCCATTTGCCCTTACTGTCGTGGAGGCTTCATTCAAGAACTCACCAATGAGACGATGCAACAAACGGCACTGTTTCAACAATGTGGCTTTCCATCACAAGTTCAGCAGTTTCGTCGTCCTCAAATCCCTAATAACATTTTTTATGGTATTCAAAATGCGTTTATGGCGTTGTGGAGAGTTGCTAGCCCAATAATTGGCCTTATCATATTTGTTATTGGTAATTTCATCAGGCAGGTAACGGCCGGATTGTATCCAAATTGGAGGCCTCGTCGCTTCGTGGTAATTCATGGAGGTCATCATCTTCCTCCTCCTCCATTTCCTCATGAGTTCACCATACCAGATAATAATTCCCCAATAAGAGGTTATTATAGTCCTCCTCCTACTCATCATATGCGTGTTGAATCCGGTGACTACTTCATGGGACCTGGATTGGAAGAACTTATTGAACAGCTCAACATGGATGATCATCAAAGCATTGGTAGTGGCGGTGGTGGTGGTTCTACTCCTGCATCGTCTTCGGTGAATGCAATGCCTACTATTAAGATCACACAGTCACACATTCGGTCTGATTCCAATTGTCCAATTTGTCAAGAAAATTTTGAGCTTGGGTCTGAGGCCAAGGCAATGCCGTGTAACCATATTTTCCACTCGGACTGCATTTCTCCTTGGTTAGCACAACATAACTCTTGCCCTGTTTGTCGTGTCGAGTTGCCACCTTCTTGA 795 0.439 MMSSGATTHWCYTCNEPIMLEWENAICPYCRGGFIQELTNETMQQTALFQQCGFPSQVQQFRRPQIPNNIFYGIQNAFMALWRVASPIIGLIIFVIGNFIRQVTAGLYPNWRPRRFVVIHGGHHLPPPPFPHEFTIPDNNSPIRGYYSPPPTHHMRVESGDYFMGPGLEELIEQLNMDDHQSIGSGGGGGSTPASSSVNAMPTIKITQSHIRSDSNCPICQENFELGSEAKAMPCNHIFHSDCISPWLAQHNSCPVCRVELPPS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2182 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 263 - -
Aev06g2182 264 SMART ring_2 217 257 IPR001841 -
Aev06g2182 264 CDD RING-H2_RNF126_like 217 258 - -
Aev06g2182 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 264 IPR013083 -
Aev06g2182 264 Pfam Ring finger domain 216 258 IPR001841 -
Aev06g2182 264 SUPERFAMILY RING/U-box 198 263 - -
Aev06g2182 264 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Aev06g2182 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 3 263 - -
Aev06g2182 264 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2182 Aev-Chr6 20497118 20498577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2182 160 262 C3H Transcription Factor Family AT5G01980 42.308 5.45e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2182 K11982 - gmx:100813674 214.542