Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2177 ATGGAAGCAAAAGGGGTCAATTTGGGACAAGAAGGATCTGAACTAACTGCACTGAGAGAGAATCTTAAGCAAAAGGAGGCTAAAATACAAGAATTGAAGCACCGTCTTGAAATCCCAATCACTACCATGCTTTCTGAAGCTAAGACAGTAAATAGAACAATTGCAGCAAAAGATCAAATTGAAAATGACAATAAAGAAAAGAAGCAAGATCATTCACTTGATACTGCCAAATATGAGGGTGATGACAAGCACATTATAAATGATGATGAAAGTAAAAGCAAACCAAAAGTGTTCAAAGATGGTGAGGATAGCAGCATATTGTACCGAGCACACCCAGATAAGGATGCGGCAGAAGCTGCCAGAGAAGCCAGACGGAGATTGGATGATAAGTTTAGATCACAAAGAAAATCAGAAAACAAAAGCATAGGGTCTGCAGAGGGCAGAAGGACAAAGATATTAGCAGAGTCGCAGAGAGATGTATTTGGGTCAAAGAAAAGTTGTTTAAGGAGGTTTAGTTGGACCAAATTGATCTGGAAGGCCTTACAACAAGAAGAGTGTGCTGTGTGCTTGGAGTTAATCAAGGTTGGAGATACAGTGATGCATCTCCCATGTCCGCATAGATTCCATTCCAAATGCTTGCAGCCATGGTTAGAAAATAATTCACACTGTCCATGTTGCAGAACAACCATTATTTCCATCTAG 702 0.4003 MEAKGVNLGQEGSELTALRENLKQKEAKIQELKHRLEIPITTMLSEAKTVNRTIAAKDQIENDNKEKKQDHSLDTAKYEGDDKHIINDDESKSKPKVFKDGEDSSILYRAHPDKDAAEAAREARRRLDDKFRSQRKSENKSIGSAEGRRTKILAESQRDVFGSKKSCLRRFSWTKLIWKALQQEECAVCLELIKVGDTVMHLPCPHRFHSKCLQPWLENNSHCPCCRTTIISI* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2177 233 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 93 229 - -
Aev06g2177 233 Coils Coil 8 35 - -
Aev06g2177 233 CDD RING-H2_PA-TM-RING 185 227 - -
Aev06g2177 233 MobiDBLite consensus disorder prediction 58 98 - -
Aev06g2177 233 MobiDBLite consensus disorder prediction 126 146 - -
Aev06g2177 233 MobiDBLite consensus disorder prediction 55 98 - -
Aev06g2177 233 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 93 229 - -
Aev06g2177 233 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Aev06g2177 233 SMART ring_2 186 226 IPR001841 -
Aev06g2177 233 SUPERFAMILY RING/U-box 178 231 - -
Aev06g2177 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 232 IPR013083 -
Aev06g2177 233 Pfam Ring finger domain 185 227 IPR001841 -
Aev06g2177 233 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2177 Aev-Chr6 20252441 20258930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2177 183 230 C3H Transcription Factor Family AT1G04790 50.000 6.54e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2177 - - gmx:100527583 181.03