Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2142 ATGTTGAGAACTCTTATAGTCATGGTGGGGGAAGACATGGAAGCTCTAGTGTATTGTACAAATCAAAGAAAGGAACCAACACAAATAGATTGTTCCTTGGGTGCCTATACTACAGGGAGAAAAACCCTTACTGCAAATTCTTCATATGGCTTTGATGAGAATATTGCCAAAATTGGTGGGAATGTTACTGTGAATGATTGTATTGATGGTGCTACTAAAGATTATTCTGAGTATATAGCTAAGTCTACACTAGATGCTAGAGTGCAGGAGTTAGAAGAAAGATTTGGTGCTTTGGAATTGAAGATCCATAAACATACTATGAAGAATACTTCTAAGAGTAGATACCTAAGTGTCTGGTGTACTATGTTAGCTATTGTAATTGTAGTTGTTGGTATTGTTTTGTTTTGTGTTGATGTGAATCCATCGAGGGAAAACTGGAGGATACAAGTAAGAGTGGTTCGTTTGTGGAACATCCCTAGCTATGATGTTTCTTCTCTTCCATACGCACAAGAAATGGTCCTGATCGATTTACAGGGTGGTAAGATTCACGCCTCTGTCAGGAAGACATTGGTGTTCAAGTTTTTCAATCAGCTAAAAGAGGGTGAAGCATATGAAATGGTCAACTTTGGTGTTGGGCGAAACGTTGGAAATTATAAGACAACTAAGCATGAATTCAAGTTGAACTTTGAAAATGGGACATTTATCAGGAGACTGAGGGAATCATCAATCCAAACTTATGGTTTTTCTTTCATTGACATGATGGATCTTTCAAAAAATGATTTTGACACTTCCTACTTAGTTGATGTCATTGGTATGCTCAGTGGTGTTGGTTGTGAGAAAGACTATGAAGACAAAGATGGAAAGCCATGTAGATTCAATGTTATTGAGTTGCAGGCTAAAGGAGTTGATTGTGCATTGTTTGGATCGTATGTGGATCAACTAAATCAGTTTTTGTCTGATGGTGATGTTTCTAATGTTGTGGTTATTATCCAGTTTGCAAGGGTCAAGAGTTTCAAGGATGTTCCTGTTACAAGGGAGTTTAAAGATAGCTTTGAAGAGTACCTGAGTTCTTTGAATGAATTAGTTGATGGAGCAAGAGATCATTATCTTGAAACTGAATTTTTGACAATGCATGAAAGGAAAACAATAGAGGAAATGAAAGACTGCAAAGAGGATTGCATCTGTGTTCTGTTGGGTAATGTTAATGATTTTATGGATGATGAAGAGTGGTGGTATACTTCTTGCACATGTAACAGGGTTGTCCATCCTTATTCTAAAGGTTTTTTATGCAAGCCGTGCAAAATGATTTTATTGTCTGTAACTCCAAGGTACAAGATAAGGATGAGAGTAATAGATGAAACTGACTCATGTTTTGTAGTCATTTTTGACAAAGAAGGGACTGCTTTGCTCAGAAAAACTTGCCAAGAATTAGTTGCTCCTATGTTGAAGGAAGTTGATTGCACATTTGGCTCAATACCCGAATCTAAATTTATTTCTGCTACTGACAATAAAAGTCTCATTGATGGGAAGAACCTACTTGGTGATTTTAGCTTTGCTGATGCTGATAAGGATAGCTCTTATGGTGAAAACTGTGAAAGAGATATTCTTGGAGTTGGTTTAGAATTGACTCCAAGCAAAAGACTATCTGATGAAGTTATCCGTTCTGGATTCGAAGATGGAGCTATTGTGATGATGGCGAGTGCACCGTCCGAAGAAAGATGGTTCAACAAATACCGATGGAGGTTGCATATGAAGAGTGAATCGGAAAATGATATTGATCCAATCCCAGATTCCTTTGTTTCAAACTTTCCAAATGAGATCGGTAATCGCTGGTCTTTACTGGATGCAAACAGTAATAGGTTCAGGCTGAGGATTGGTGTGATAAATGGTGTACCAAGGATTAGGTTCCCAAAACTAATGAGAGAATTTTACTCAATTGTGGGTGTGTGTTACTTTGAATTATACTATTTGGGTTTTTCTAAATTTCTGCTGAAAGTCTTCAACGAAGACAATTTAGAAGTCAAGTACCCTATTTTCCCGATTAAAATAGAAGATTATGATGAAATCAATGGTACTCAACTTAACCAACCATTTACAATGGTGTTAACCAAATACATGGCTACTGGATCAAAACTGAATTTGCCTGCTGCCATGTCTGCTTTCATCTATATGACTTCCACATACAAGTGGAATCTTATAGGTCCTTCTGGTGTTAATGTCAAGTGTAAAATCTTAACCACAGAGAAACCAAAAGTAAAGTCTGGAAGAGAGTGGAGGGACTTCTGCCGTGTGAACAAACTTATGCCAGGAGATACTTGCATTTTCAGAGCTCATCCTCAATTGAAAAGGACTTTCCAAGTTATAGTAAATGGTGCTTCTGACGTACATTACTTATACTATCCTTAA 2406 0.3728 MLRTLIVMVGEDMEALVYCTNQRKEPTQIDCSLGAYTTGRKTLTANSSYGFDENIAKIGGNVTVNDCIDGATKDYSEYIAKSTLDARVQELEERFGALELKIHKHTMKNTSKSRYLSVWCTMLAIVIVVVGIVLFCVDVNPSRENWRIQVRVVRLWNIPSYDVSSLPYAQEMVLIDLQGGKIHASVRKTLVFKFFNQLKEGEAYEMVNFGVGRNVGNYKTTKHEFKLNFENGTFIRRLRESSIQTYGFSFIDMMDLSKNDFDTSYLVDVIGMLSGVGCEKDYEDKDGKPCRFNVIELQAKGVDCALFGSYVDQLNQFLSDGDVSNVVVIIQFARVKSFKDVPVTREFKDSFEEYLSSLNELVDGARDHYLETEFLTMHERKTIEEMKDCKEDCICVLLGNVNDFMDDEEWWYTSCTCNRVVHPYSKGFLCKPCKMILLSVTPRYKIRMRVIDETDSCFVVIFDKEGTALLRKTCQELVAPMLKEVDCTFGSIPESKFISATDNKSLIDGKNLLGDFSFADADKDSSYGENCERDILGVGLELTPSKRLSDEVIRSGFEDGAIVMMASAPSEERWFNKYRWRLHMKSESENDIDPIPDSFVSNFPNEIGNRWSLLDANSNRFRLRIGVINGVPRIRFPKLMREFYSIVGVCYFELYYLGFSKFLLKVFNEDNLEVKYPIFPIKIEDYDEINGTQLNQPFTMVLTKYMATGSKLNLPAAMSAFIYMTSTYKWNLIGPSGVNVKCKILTTEKPKVKSGREWRDFCRVNKLMPGDTCIFRAHPQLKRTFQVIVNGASDVHYLYYP* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2142 801 CDD RPA1_DBD_A_like 147 235 - -
Aev06g2142 801 Gene3D - 136 237 IPR012340 -
Aev06g2142 801 SUPERFAMILY Nucleic acid-binding proteins 378 480 IPR012340 -
Aev06g2142 801 SUPERFAMILY DNA-binding pseudobarrel domain 697 790 IPR015300 -
Aev06g2142 801 PANTHER REPLICATION FACTOR A 1, RFA1 140 478 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aev06g2142 801 SUPERFAMILY Nucleic acid-binding proteins 138 236 IPR012340 -
Aev06g2142 801 SUPERFAMILY Nucleic acid-binding proteins 248 345 IPR012340 -
Aev06g2142 801 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 140 478 - -
Aev06g2142 801 Gene3D - 242 358 IPR012340 -
Aev06g2142 801 Gene3D - 372 504 IPR012340 -
Aev06g2142 801 Pfam Replication factor-A C terminal domain 403 479 IPR013955 -
Aev06g2142 801 Gene3D - 691 793 IPR015300 -
Aev06g2142 801 Coils Coil 81 108 - -
Aev06g2142 801 Pfam Domain of unknown function DUF223 171 235 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2142 Aev-Chr6 19743725 19760878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2142 139 477 Core DNA Replication Machinery Family AT5G45400 20.366 9.71e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2142 - - vun:114184752 322.783