Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1968 ATGGAGTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGAACTAGCTAACCCTGCTTCAGTGGACTTGAGGCTTGGTGAGTCTTCTGATTTGGTGGGGAAAACAGAACAAGATAAGGAAAAGGATGAACAGAAAGACTCAAAAGCTGGGTCATCATCAGTATCACTATCACCTTCTTCATCGAAGAGATCCCGTCTGCATAATGGGTCACAGAACTTGTCATGCTTGGTTGATGGGTGCAGCTCTGACCTCAGTGATTGCAGGGAGTATCATCGGCGACATAGGGTCTGCGAAAAGCACTCGAAAACCCCGGTTGTGTTGGTTGCTGGGAAGCAGCAGAGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAGCGCCTCGATGGCCATAATAGGCGCCGGAGGAAACCTCAGCCGCCGTCTTTTCTCATGACTGCCGAGAAATTCATTTGCAATTACAAAGGACCTAGAATCCTGCAATTCGGTAACCCTCAGGCTTACGCGAACCCTGTCGTGAGAAACATGTGGCCAACTACTGCATCAAAATCTGGAGCTGAATCAAATTATGATCATCACAGATTTTTATACAGAATTGACAAGCACAGGCAGGACAAGGAGCTTCTCCTCTGGCAAGATAACGACCCAAAAGCAGGCAATGCTAATGAAGCAATAATGCATGGAACTCCAATCTATCAGCCTATTTGCGGCGCCATTGCCCCGTCATCAGCAGGCGGGAAGTGCATCCGGCCAAAGCCGCCTTCCGATGGCAAACCAGTGTCGTTCGACTCGGGTTGTGCTCTCTATCTTCTGTCAAATCTCCAAACACAAACCTCAGAACTGAGCCTTGTGCCATCCAGCATCACCTGCCCTATAATGCAATCTCCTTCCAGAGGAACTGTGCAATATGATGAAGTGGATGAGTTTTCATGCTCAGAGAAGGCTAAAGATAAGCCTAGTAATAATAATGGTCCAGTGCTGGTTCTTGATGCAAACACAACAAATCTTCATTGCAATGGTATGCTTCAAATGGGGTCTGATGGATTTGTTGAAAATGGGGACTCATCATTGACACTTCCATTTTTCTGGGAGTAG 1134 0.4727 MEWDWKEFAWDPSGLELANPASVDLRLGESSDLVGKTEQDKEKDEQKDSKAGSSSVSLSPSSSKRSRLHNGSQNLSCLVDGCSSDLSDCREYHRRHRVCEKHSKTPVVLVAGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSFLMTAEKFICNYKGPRILQFGNPQAYANPVVRNMWPTTASKSGAESNYDHHRFLYRIDKHRQDKELLLWQDNDPKAGNANEAIMHGTPIYQPICGAIAPSSAGGKCIRPKPPSDGKPVSFDSGCALYLLSNLQTQTSELSLVPSSITCPIMQSPSRGTVQYDEVDEFSCSEKAKDKPSNNNGPVLVLDANTTNLHCNGMLQMGSDGFVENGDSSLTLPFFWE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1968 377 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
Aev06g1968 377 SUPERFAMILY SBT domain 76 156 IPR036893 GO:0003677|GO:0005634
Aev06g1968 377 MobiDBLite consensus disorder prediction 29 69 - -
Aev06g1968 377 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 377 IPR044817 GO:0003677
Aev06g1968 377 MobiDBLite consensus disorder prediction 51 69 - -
Aev06g1968 377 MobiDBLite consensus disorder prediction 31 50 - -
Aev06g1968 377 Gene3D - 68 138 IPR036893 GO:0003677|GO:0005634
Aev06g1968 377 Pfam SBP domain 77 150 IPR004333 GO:0003677
Aev06g1968 377 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 20 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1968 Aev-Chr6 16984503 16986387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1968 22 188 SBP-box Gene Family AT5G50670 51.445 8.77e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aev06g1968 SBP 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1968 - - lja:Lj1g3v3847150.1 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g1968 06 16984503 16986387 Aev06g1968 06 16984503 16986387 ECH