Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1925 ATGGAAGTGGACGAGGAAAATGCACCATCAACCACTACTGCTGACTCCTCTGTACCATCCTCTGATGTTCAAAATGCAATTATGCCCCTTCCAATTCAACCCATTCTTCCACCTTCTGCGACGGTGCCGCCGCCTATAGCCCCAATTCCCACAATTCCTCCCCCTTCAGTTGTGCCTCCTATAGCCCCAATTCCTGCTCCTCCGCTTGTTCGCCCTCTGGCACCACTTCCGCCTCGGCCGCCACCGCAAATTAGGCCACCTGTGTCGCAGAATGGTGAGGTTGAATCAAGTGAATCTGATTCGGATGACGATGAATCGGGTGCAAGGATCAATCAGGGTGTCGGGTACGAGATATCGGAAGAGAGTAGGCTGGTGAGAGAGAGGCAAGAGAAGGCAATGCAGGAGCTCTTGATGAAGAGGCGTGCTGCTGCACTAGCTGTTCCTACAAATGACATGGCCGTTCGGGCTCGTCTACGCCGCCTCGGCGAGCCGATAACTCTATTTGGCGAGAGGGAGATGGAGAGGAGGGACAGGTTGAGGATGATAATGGCAAAGCTGGATGCTGAAGGCCAGCTGGAGAAGCTAATGAAAGCTCATGAGGAGGAAGAGACTGCGACTTCTGCTGCGAAAGATGAGGATGAGGAAGACATACAGTATCCCTTTTACACTGAAGGTTCAAAGTCCCTTATGGATGCCAGAATTGATATAGCTAAATATTCTTTGGTTAGGGCAGCATTGCGCCTTGAACGTGCCCGGAGAAGAAGGGATGATCCAGATGAAGATATGAATGCAGAGATGGATTGGGCACTGAAGCAGGCTGCTAGTTTGAGTCTCGAGTTCAGTGAAATTGGAGATGATCGACCACTTTCTGGCTGCTCTTTATCTCGAGATGGAAAATTGCTTGCTACCTGTTCTCTAACTGGAGCTGCCAAGTTGTGGAGCATGCCTAACGTTACGAAATCTTCTACCTTAAAGGGACACACCGAGCGTGCCACTGATGTTGTTTTTTCTCCTGTGAACAACCATTTAGCAACTGCATCTGCTGATCGAACTGCAAAGTATTGGAATGATCAAGGATCTCTCTTAAAGACGTTTGAGGGTCATATTGACCGGCTTGCACGTATTGCTTTCCATCCATCGGGAAAGTACCTGGGCACTGCTAGTTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGAGAGGAGTTGCTTCTTCAAGAGGGTCACAGCAGGAGTGTGTATGGTTTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGCGGGCTGGATGCTCTTGCTCGTGTTTGGGATCTCCGAACTGGGAGAAGTATTCTTGCCCTGGAAGGTCATGTCAAGCCGGTTCTTGGAATTAGCTTTTCACCTAATGGATATCATTTAGCCACAGGTGGTGAAGACAACACTTGTCGCATATGGGACTTGAGGAAGAAGAAATCCATGTACACCATTCCTGCTCACTCTAATTTGATATCACAAGTCAAATTTGAGCCGCAAGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACAGCTAAGGTTTGGTCAGCCCGTGATTTTAAGCCTGTGAAGACGCTTACTGGGCATGAAGCAAAAGTTACTTCTGCGGATGTTCTCGGAGATGGAAGCTTAATTGCAACTGTCTCCCATGATCGCACCATAAAGTTATGGTCCAGCAATATGACTAGTGAACATGGCTCTATGGATGTTGATTAG 1740 0.4816 MEVDEENAPSTTTADSSVPSSDVQNAIMPLPIQPILPPSATVPPPIAPIPTIPPPSVVPPIAPIPAPPLVRPLAPLPPRPPPQIRPPVSQNGEVESSESDSDDDESGARINQGVGYEISEESRLVRERQEKAMQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEETATSAAKDEDEEDIQYPFYTEGSKSLMDARIDIAKYSLVRAALRLERARRRRDDPDEDMNAEMDWALKQAASLSLEFSEIGDDRPLSGCSLSRDGKLLATCSLTGAAKLWSMPNVTKSSTLKGHTERATDVVFSPVNNHLATASADRTAKYWNDQGSLLKTFEGHIDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSMYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLTGHEAKVTSADVLGDGSLIATVSHDRTIKLWSSNMTSEHGSMDVD* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1925 579 Coils Coil 185 212 - -
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 402 - -
Aev06g1925 579 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 566 - -
Aev06g1925 579 Gene3D - 125 206 IPR036285 -
Aev06g1925 579 SMART WD40_4 442 481 IPR001680 GO:0005515
Aev06g1925 579 SMART WD40_4 400 439 IPR001680 GO:0005515
Aev06g1925 579 SMART WD40_4 275 314 IPR001680 GO:0005515
Aev06g1925 579 SMART WD40_4 527 566 IPR001680 GO:0005515
Aev06g1925 579 SMART WD40_4 484 524 IPR001680 GO:0005515
Aev06g1925 579 SMART WD40_4 317 356 IPR001680 GO:0005515
Aev06g1925 579 SMART WD40_4 358 397 IPR001680 GO:0005515
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 483 - -
Aev06g1925 579 CDD WD40 288 566 - -
Aev06g1925 579 MobiDBLite consensus disorder prediction 1 115 - -
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 491 524 - -
Aev06g1925 579 SUPERFAMILY PRP4-like 132 187 IPR036285 -
Aev06g1925 579 PANTHER WD40 REPEAT PROTEIN 107 571 - -
Aev06g1925 579 MobiDBLite consensus disorder prediction 1 27 - -
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 448 IPR001680 GO:0005515
Aev06g1925 579 Gene3D - 450 577 IPR015943 GO:0005515
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 407 444 - -
Aev06g1925 579 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Aev06g1925 579 PRINTS G protein beta WD-40 repeat signature 468 482 IPR020472 -
Aev06g1925 579 PRINTS G protein beta WD-40 repeat signature 343 357 IPR020472 -
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 490 IPR001680 GO:0005515
Aev06g1925 579 SMART pr04_2 149 202 IPR014906 -
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 356 - -
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 406 IPR001680 GO:0005515
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 356 IPR001680 GO:0005515
Aev06g1925 579 Gene3D - 266 449 IPR015943 GO:0005515
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 491 533 IPR001680 GO:0005515
Aev06g1925 579 MobiDBLite consensus disorder prediction 31 87 - -
Aev06g1925 579 ProSitePatterns Trp-Asp (WD) repeats signature. 384 398 IPR019775 -
Aev06g1925 579 Pfam WD domain, G-beta repeat 529 566 IPR001680 GO:0005515
Aev06g1925 579 Pfam WD domain, G-beta repeat 408 439 IPR001680 GO:0005515
Aev06g1925 579 Pfam WD domain, G-beta repeat 447 481 IPR001680 GO:0005515
Aev06g1925 579 Pfam WD domain, G-beta repeat 359 397 IPR001680 GO:0005515
Aev06g1925 579 Pfam WD domain, G-beta repeat 487 524 IPR001680 GO:0005515
Aev06g1925 579 Pfam WD domain, G-beta repeat 322 356 IPR001680 GO:0005515
Aev06g1925 579 SUPERFAMILY WD40 repeat-like 278 565 IPR036322 GO:0005515
Aev06g1925 579 PANTHER BNAC04G01920D PROTEIN 107 571 - -
Aev06g1925 579 Pfam pre-mRNA processing factor 4 (PRP4) like 154 180 IPR014906 -
Aev06g1925 579 ProSitePatterns Trp-Asp (WD) repeats signature. 426 440 IPR019775 -
Aev06g1925 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 566 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1925 384 565 U-box Gene Family AT2G33340 23.684 6.75e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1925 K12662 - gmx:100788948 837.025