Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1821 ATGGCGAACATATACAAGTTGCTCCTTTCTTTGTGTTTGGTGGCAATTTTACCATTATTTTCGCATGCAAAAAGTTCAAAGAATGATACTGCGTATTGGGAGGAACAATTGAGAGAGTCTAATGAATATTGGAAAGAAAGAACAGCCATTGCTCAAAAGGCCAACCGAGAAGCTTATGTCGTTGACCCATATGAAGTCACCGCCAACGTCTCTTCTATCGTTAGCCTGCAGACAAAGAGTGGAAGAAGGAACTTGAAGGAGAAGAAAGGTGGTGGATGCATGGCAACCAACCCAATTGACAAATGTTGGATGTGTGACCCTAATTGGGAACAAAACCGCAAGAAACTCGCAGATTGTGTGATAGGGTTTGGAAAAAACACTGTCGGAGGAAAATATGGTCCAATCTATGTGGTCACTGATTCCTCAGACAATGAATTAATCAATCTGATTCCTGGTACTCTTCGCCACGCAGTCACAAGAACTGGTCCTCTATGGATCATCTTTGCTCATGACATGGTCATTAGGCTCAGCGAAGAGCTCTTAATGTCTAGCGACAAGACCATTGATGGCAGAGGAGTTGATGTTCATATTGCCAATGGGGCTGGAATCACAATCCAATCTGCAAAAAATGTGATCATCCATGGAATTAAGATTCACAACATTTTCTCTGGTAAAGGTGGAATGGTCAGAGATAGTGAGAGTCATTGGGGATTAAGGACGCGAAGTGATGGTGATGGAATCAGTATCCTTGACTCTAGCAATATTTGGATTGACCATGTTACCCTCAAGAAATCCAGTGATGGGCTTATCGATGTTATTAGTGGATCCACTGCTGTTACCATCTCCAATAACTTTTTCGCACATCAAAACAAGGTGATGTTATTTGGTGCTAATGACTTTCACACTCAAGATGAAATAATGCAAATCACTGTGGCATTCAACAGATTTGGTCAAAAATGTGTGCAAAGGATGCCAAGGTGTAGACGAGGCTTTTTCCATTTGGTGAACAATGACTACCACCATTGGGAGATGTATGCCATTGGTGGTAGCATGCATCCTACCATTATTAGTGAGGGTAATCGATTCGAAGCCCCTTTCAACATTTTTGCTAAAGAGGTAACAAAGAGGGAAACAACAGAAGATGTATGGATAAAGTGGCAATGGAGATCAACCGGTGATTTGTTTTTGAATGGAGCATATTTCAGAGAATCTGGACCTAAGTTCTTAAACAACGCATTCTTTAATAAGGAAATGATCACAGCTAAGCATGGAGTATATGTGAAAATGCTCACTCGCACTGCTGGCGCCCTTGAATGCAAACCTCACAAACTTTGTCATGCAAAAATTGCTTCGGAAAAACAATAG 1365 0.4132 MANIYKLLLSLCLVAILPLFSHAKSSKNDTAYWEEQLRESNEYWKERTAIAQKANREAYVVDPYEVTANVSSIVSLQTKSGRRNLKEKKGGGCMATNPIDKCWMCDPNWEQNRKKLADCVIGFGKNTVGGKYGPIYVVTDSSDNELINLIPGTLRHAVTRTGPLWIIFAHDMVIRLSEELLMSSDKTIDGRGVDVHIANGAGITIQSAKNVIIHGIKIHNIFSGKGGMVRDSESHWGLRTRSDGDGISILDSSNIWIDHVTLKKSSDGLIDVISGSTAVTISNNFFAHQNKVMLFGANDFHTQDEIMQITVAFNRFGQKCVQRMPRCRRGFFHLVNNDYHHWEMYAIGGSMHPTIISEGNRFEAPFNIFAKEVTKRETTEDVWIKWQWRSTGDLFLNGAYFRESGPKFLNNAFFNKEMITAKHGVYVKMLTRTAGALECKPHKLCHAKIASEKQ* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1821 454 SUPERFAMILY Pectin lyase-like 97 436 IPR011050 -
Aev06g1821 454 Pfam Pectate lyase, N terminus 39 85 IPR007524 GO:0030570
Aev06g1821 454 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Aev06g1821 454 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Aev06g1821 454 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Aev06g1821 454 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Aev06g1821 454 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Aev06g1821 454 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Aev06g1821 454 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Aev06g1821 454 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Aev06g1821 454 Gene3D - 96 438 IPR012334 -
Aev06g1821 454 SMART amb_all 171 368 IPR002022 -
Aev06g1821 454 Pfam Pectate lyase 181 362 IPR002022 -
Aev06g1821 454 PANTHER PECTATE LYASE 36 445 - -
Aev06g1821 454 PANTHER PECTATE LYASE 18-RELATED 36 445 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1821 Aev-Chr6 14692027 14699953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1821 41 445 Polysaccharide Lyase AT1G14420 55.116 2.56e-162 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1821 K01728 - gmx:100796307 566.614