Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1613 ATGGCTGGCAATCCCCCTCTTCAGCCTTTTGTGAATGCCCACATGCATCAGTTTACATTTCAAGGTGCAGAGGTGGCAGAGCCGAAGCCTTCATCTGTGGAGTCACCGGCCACCCTTTTGATTAAGCACCTTCCTGAAGCTATCCCTCATGACACCCTTTCTCGACTCTTCTCCCATTATGGTGCTTCCTCTGTTCGTCCTTGCTCTATTGGAAGGTTGAGAAATTGTGCTTTTGTGGATTTTAAAAATGATATGCTGGCATCTCAAGCACAACATCAATTAAATGGGTTGAGGTTACTTGGCAAAGTCTTGTCTGCAGAAAGAGCTAATAAACCAAATGAGAATAGTGAAAATAGCAGTGTAGCTCAGCTGGGAAAGGACTCTAAAACATCAGTGGTTAAGGATGCAAATATATCCAAACCTATTGATGGAGACACAAAATCAGGGCGCCTCCCTATTGCTGAGCCAATTGCTGAAAGACTGGGCGTCGACTATCCATTTCCTCCTCACCTTGAGTATGCTTACCCTCCACCAGATGGTAATATACTGACCAACATTGTCAATGCTCTCATTGCTGTTCCCCGGTTCTACACTCAGGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCACTGCCTACACCACCTCTACCTCCACAGGTACTAGCCCCACCTCCACCCCCTCCTCCTGTAGCTGTACCTGTGAAAGCTCAGCCTGCAGATCTTTCAAGTAGTGAATCAGAGATGGAATCTTCAGATGAGGAAGGGGTAGGAACAGAAAAACGTGAGAAAAAGCGTGCCAGGCATGAGAACATTATTGGCCCTGCCATTGACAAAGATGTGGCTCATGAGGATGTTGGAGTAAAACCAGCCACCTTGGTCCCAAAAGAAATCCCAGTTATAAAAAAGAAGAACCCTGTCTTGCAGATAAAAATTGTTCCTAAAGAAAATAAAGATGAGCATAAAAATGATGGCGCAGAGCTAGAGTTACAAGAGCCAGAAAAAGATAGTCCAGATTCTCATAGATTTTTGACACCAGAAGAATTAGAGAAAGGAAAGTTGCCTCCTGAAGAAATCTTGTCTCTTCCAATGTTTAAGAACTATACCACTGGAAATCCTGCTCCCGTTTTGTATATTAAGAATTTGGCAAAAGATGTGATTGGAGAAGATTTTTATGTTATATTTGGGTCCTTGTTTGGAAGTATTGAGGCTGCCAAGTCTGGTCTTCATGTCAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCGTTTTTAACGTTCCCCTCAATTGAACTGGCTCATCATGCTCTGAATCTAGTTAATGGATATGTATTTAAAGGCAAACCAATGATCATCCAGTTTGGTAGGAATCCTGCGACCGCAAAAGGAACATGA 1410 0.4326 MAGNPPLQPFVNAHMHQFTFQGAEVAEPKPSSVESPATLLIKHLPEAIPHDTLSRLFSHYGASSVRPCSIGRLRNCAFVDFKNDMLASQAQHQLNGLRLLGKVLSAERANKPNENSENSSVAQLGKDSKTSVVKDANISKPIDGDTKSGRLPIAEPIAERLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPQVLAPPPPPPPVAVPVKAQPADLSSSESEMESSDEEGVGTEKREKKRARHENIIGPAIDKDVAHEDVGVKPATLVPKEIPVIKKKNPVLQIKIVPKENKDEHKNDGAELELQEPEKDSPDSHRFLTPEELEKGKLPPEEILSLPMFKNYTTGNPAPVLYIKNLAKDVIGEDFYVIFGSLFGSIEAAKSGLHVKLMQEGRMRGQAFLTFPSIELAHHALNLVNGYVFKGKPMIIQFGRNPATAKGT* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1613 469 MobiDBLite consensus disorder prediction 317 355 - -
Aev06g1613 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 111 IPR000504 GO:0003723
Aev06g1613 469 SUPERFAMILY RNA-binding domain, RBD 36 463 IPR035979 GO:0003676
Aev06g1613 469 Gene3D - 17 121 IPR012677 -
Aev06g1613 469 CDD RRM2_RBM40_like 381 460 - -
Aev06g1613 469 SMART rrm1_1 381 458 IPR000504 GO:0003723
Aev06g1613 469 SMART rrm1_1 38 107 IPR000504 GO:0003723
Aev06g1613 469 MobiDBLite consensus disorder prediction 259 283 - -
Aev06g1613 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 380 462 IPR000504 GO:0003723
Aev06g1613 469 MobiDBLite consensus disorder prediction 110 135 - -
Aev06g1613 469 MobiDBLite consensus disorder prediction 224 283 - -
Aev06g1613 469 PANTHER UNCHARACTERIZED 30 467 IPR045164 -
Aev06g1613 469 MobiDBLite consensus disorder prediction 110 150 - -
Aev06g1613 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 104 IPR000504 GO:0003723
Aev06g1613 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 382 454 IPR000504 GO:0003723
Aev06g1613 469 Gene3D - 375 468 IPR012677 -
Aev06g1613 469 MobiDBLite consensus disorder prediction 224 240 - -
Aev06g1613 469 MobiDBLite consensus disorder prediction 318 355 - -
Aev06g1613 469 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 30 467 - -
Aev06g1613 469 CDD RRM1_RBM40_like 38 109 IPR034147 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1613 382 458 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 2.52e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1613 K13157 - gmx:100814307 654.44