Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1606 ATGGCACAGTTCACAACACATGGCCGCTTGAAGCTTCTGTTCAATGGTGGAGAGAGTGTGTCATCTCGTTTGGATCAAAGGGACCCTTTTCACTACAAGTGCAGATCAGTTCAGACCCACAAGAGGAGGCTCAGGAACATTGGTTTTGGTTCCTCTGCTGGAATTCATCATGCATCATCATCATCTTCTTCTCTGAGAAGTAGAACCAGCCGTTGCAATGCTGAGGCACGCTCCATTGCTGGGAATGAGGATGTTCATGATGCCTATGATGGTGATTATGTTGATTTTGATGATGATGATGATGAAGTGTTTGAGGATGATGGCTTGTCTTGTTTCAGGGGTCTTGTGTTGGATATATCATACAGGCCGGTCAATGTTGTAGGCTGGAAACGTGCTATATGTCTGGAGTTTATGGAGAAGGCTGATGTACTAGAGTACTATGCTAAGACTGTGAACTCCCCCAATGGATCCTTCTATATACCAGCTGTCTTAAGGGTTCCTCATTTACTTCAGGTTGTTAAAAGAAGAATAGTCAAGAACAATCTTAGTCGGAAAAATATTCTATTTCGGGACCATTACACTTGTCAGTATTGCTCTTCACGTGAAAATTTGACCATTGATCACGTGGTGCCCACTGCACGAGGCGGAGAATGGACATGGGACAATCTAGTGACTGCTTGTGCCAAATGCAACTCAAAGAAAGGTCAGAAAACATTAGAGGAAGCAAAAATGAAGTTGCTTAAGGTCCCAAAGGCCCCAAAGGAGTACGACATACTTGCCATACCTCTAACTTCTGCAGCTGTAAGAATGCTGACAATAAGAAAGGGAACACCTGAAGAGTGGCGTCAGTATTTAAGGGAAAGTCATGGACATGAAATTAGAGATTCTCTAAGCCATAAGATAGATAAGAGGGAAAGGAAGAAAGAGCAAGTTCAAGTTCTTGCCCCTTCTTGCTCAAAGCTTTCAACCTCTTCAACCTGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTTGATGTTGGGTTGGAATGGCTATCAGTATTTGTTGAAGATTGCTTTTCAAGCCCACCAAGTTGTGTTTTAGGATCTACAAGTGTTCATGCCACAACAACCAAAAACCCTTCAACCACACTACTAAAGAAGAGGCCACAAGAGAGTAATGAGTCTTCACTAACAAAATTCTCAGTCCCTGGAAAAGCAAGAAGCAAGAGAAAGAGGCTTTCAGCACCAAGAAGTGCAAATTACAGAGACCCTTTGAGCATTTGGTCACACAATTTGAACCTGAACCCTTCTAATGACTCATTGATGATCTCAGACCCTCCTCTGCTCAAACAGGAATATTGGTTAGCAGATAGTGAACTCTTTGTCCCAAAACAGAAACAGAACAAAAAGGATAATGATGATGATGATAATGAGCAACAACAAGGGGTAGCAGCAATAACAAAAGATTGTAAAGAAGAAGAAGAACAACAACAACAAGAACAAGTGTTGCTGCAAAAAGGGTTAGTGATGAGGAAGGAAAGTTTTGGTTTTGATTTTGGTTTTGGTTTTGTGGAGTGTGAAAATGAGGGAAGTAGTAATAATAATAATGAGAATGGTCAGAATAGTAATCAATTAGTGCCAAGGAGGTGCACACATTGCTTGGCACAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTGTGCAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTACCAGAATATAGGCCAGCAAAGAGTCCTACTTTTGTGAGCTACTTGCACTCAAATTCCCACAAGAAGGTCATGGAGATGAGGATGCATGGACATGGACATGCTGGTTCTTCTTCTATCCTCCATTCCTAG 1869 0.4264 MAQFTTHGRLKLLFNGGESVSSRLDQRDPFHYKCRSVQTHKRRLRNIGFGSSAGIHHASSSSSSLRSRTSRCNAEARSIAGNEDVHDAYDGDYVDFDDDDDEVFEDDGLSCFRGLVLDISYRPVNVVGWKRAICLEFMEKADVLEYYAKTVNSPNGSFYIPAVLRVPHLLQVVKRRIVKNNLSRKNILFRDHYTCQYCSSRENLTIDHVVPTARGGEWTWDNLVTACAKCNSKKGQKTLEEAKMKLLKVPKAPKEYDILAIPLTSAAVRMLTIRKGTPEEWRQYLRESHGHEIRDSLSHKIDKRERKKEQVQVLAPSCSKLSTSSTCLDDLFSAQNTEVDVGLEWLSVFVEDCFSSPPSCVLGSTSVHATTTKNPSTTLLKKRPQESNESSLTKFSVPGKARSKRKRLSAPRSANYRDPLSIWSHNLNLNPSNDSLMISDPPLLKQEYWLADSELFVPKQKQNKKDNDDDDNEQQQGVAAITKDCKEEEEQQQQEQVLLQKGLVMRKESFGFDFGFGFVECENEGSSNNNNENGQNSNQLVPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMHGHGHAGSSSILHS* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1606 622 ProSiteProfiles GATA-type zinc finger domain profile. 543 575 IPR000679 GO:0006355|GO:0043565
Aev06g1606 622 CDD ZnF_GATA 544 591 IPR000679 GO:0006355|GO:0043565
Aev06g1606 622 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 542 603 - -
Aev06g1606 622 SMART GATA_3 539 593 IPR000679 GO:0006355|GO:0043565
Aev06g1606 622 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 309 609 - -
Aev06g1606 622 PANTHER GATA TRANSCRIPTION FACTOR 309 609 - -
Aev06g1606 622 Gene3D - 171 259 - -
Aev06g1606 622 CDD HNHc 184 235 IPR003615 -
Aev06g1606 622 MobiDBLite consensus disorder prediction 364 412 - -
Aev06g1606 622 SMART HNH_5 182 232 IPR003615 -
Aev06g1606 622 MobiDBLite consensus disorder prediction 364 397 - -
Aev06g1606 622 Pfam HNH endonuclease 195 246 IPR029471 -
Aev06g1606 622 Gene3D - 535 607 IPR013088 GO:0006355|GO:0008270
Aev06g1606 622 Pfam GATA zinc finger 545 579 IPR000679 GO:0006355|GO:0043565
Aev06g1606 622 ProSitePatterns GATA-type zinc finger domain. 545 570 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1606 Aev-Chr6 11843151 11861838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1606 319 607 C2C2-Gata Transcription Factor Family AT4G32890 34.551 1.53e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aev06g1606 HNH_5 1e-16 CL0263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1606 - - aprc:113861293 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g1606 06 11843151 11861838 Aev06g1606 06 11843151 11861838 ECH