Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1571 ATGACGACACCGCCCTGCAGCAAGGACGTGGGGATCAAGAAAGGGCCATGGACACCGGAGGAGGACGAGATCCTCGCGAATTTCGTCCGGGAAGAAGGGGAGGGGCGGTGGCGCACTCTGCCGAAGCGGGCAGGGCTGCACCGCTGCGGCAAGAGCTGCCGCCTCCGATGGATGAACTATCTCCGCCCAAATGTCAAGAGAGGACACATCGCTCTTGATGAGGAAGATCTCATCCTCCGCCTTCACCGTTTGCTGGGTAACAGGTGGGCTTTGATAGCAGGGAGAATACCAGGGAGGACTGATAATGAGATTAAGAATTACTGGAATACACATATCAGCAAGAAGCTCATAAGGCAAGGCATAGATCCAAGGACCCATAAGCCATTAATCACCAACACCAACAATACTACTACGAATGCTTTTCTCATAAGTAGTGATATTCATGAATCATCAAATAATCTCAAGGGTAGTAGTCTTGTTAATCATAGTCACTATCATCATCATCCTGCACTAGAAACTATTGGCAGCAGCAGCAGCAATAGCACTCGAAGAACAAATAATAATAATAATAATGTTGATGAGGTAATTCCAACAAGTGGTGATGATGATGGGAAACTAGTACTGGAAGAGTATCATCAAAACATCAAAGATCAGCAGGGAAGAAATGATGATAGTAATAATAATGAAGATACTACGTTCATGTTGTTTCTGAATTCATTGGTCAATGATGAAGAAGAAGAAGTAGTGATGAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATATTGGGTTTGCTTCTTCTTGTTTGCCAGTATCAAGATTATGTTTTGCACAAACTCATCATGATGCAGCTTCTTTCAATACTCTTGCTGATGATTGGGAAGCTGAATTCAGCAATGCACTAAACGGAGGAGGAGGAGGACAATATTACTATTATGGTTCATCACCTTCTTCTATGTAA 972 0.4187 MTTPPCSKDVGIKKGPWTPEEDEILANFVREEGEGRWRTLPKRAGLHRCGKSCRLRWMNYLRPNVKRGHIALDEEDLILRLHRLLGNRWALIAGRIPGRTDNEIKNYWNTHISKKLIRQGIDPRTHKPLITNTNNTTTNAFLISSDIHESSNNLKGSSLVNHSHYHHHPALETIGSSSSNSTRRTNNNNNNVDEVIPTSGDDDGKLVLEEYHQNIKDQQGRNDDSNNNEDTTFMLFLNSLVNDEEEEVVMSNNNNNNNNNNNNNNIGFASSCLPVSRLCFAQTHHDAASFNTLADDWEAEFSNALNGGGGGQYYYYGSSPSSM* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1571 323 CDD SANT 16 61 IPR001005 -
Aev06g1571 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aev06g1571 323 MobiDBLite consensus disorder prediction 172 196 - -
Aev06g1571 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aev06g1571 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aev06g1571 323 CDD SANT 73 112 IPR001005 -
Aev06g1571 323 Pfam Myb-like DNA-binding domain 73 111 IPR001005 -
Aev06g1571 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aev06g1571 323 Coils Coil 208 228 - -
Aev06g1571 323 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 264 - -
Aev06g1571 323 MobiDBLite consensus disorder prediction 171 200 - -
Aev06g1571 323 Gene3D - 12 67 - -
Aev06g1571 323 Gene3D - 71 140 - -
Aev06g1571 323 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 3 264 - -
Aev06g1571 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aev06g1571 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aev06g1571 323 SMART sant 66 114 IPR001005 -
Aev06g1571 323 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1571 Aev-Chr6 11531932 11534144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1571 3 243 MYB Transcription Factor Family AT3G13540 53.527 9.60e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aev06g1571 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1571 K09422 - gmx:100797847 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g1571 06 11531932 11534144 Aev06g1571 06 11531932 11534144 ECH