Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1547 ATGGCTGAGCCACAAGGTAGTGGCAGTGGTGATCATGGCATTGTTAATTCATCCGGGCCTAGGCGCAAAGGTGCGGCTACAAAGCGCGCCATAACCATGGCCCCAGAAACAATTACAACGCAGGCTCCTCCATGTGGGGCCTGCAAGTTCTTGAGGAGAAAATGCATAAGTGGGTGCATCTTTGCACCACACTTTGGTTCTGACCAAGGTGCGGCGCGCTTTGCAGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCAAAGCTCTTGTTGCACATTCCAGTCAACCGCCGCCATGAGGCGGTGGTTACCATATCCTATGAGGCTCAGGCAAGATTGTCTGATCCAGTTTATGGTTGTGTCTCCACCATTCTTGCTTTGCAGCATCAGGTGGCATCATTGCAAGGGGAGCTTTCAATGGTGCAAAATCAGCTGATAAATAGCAGTTACACCCAAAAGTTCCAAACTTTCTTGACATATACGGAACTTGACACCTTCACTTTTGCATTCCTCTGCCAAGCTTGTTGTGCCAATTCAAGCTGTACCCACTTCGGGATTCAGCTCCATTCCCTTGTTTTTAAGGTGGGTTTTCAGTTTCATGTCTATGTGCAAACTGGGTTGGTCCAAATGTACTCGAGTTTTGGTCTTTTGGTTGAGGCGTTCAAGGTGTTCGACGAAATGCTTGAGAGGAGCACTGTCACTTGGAATGTATTGATCTCCGGTTTGGTCTTGTGGGGTGAGTTTGAACTTGCTTGTTCCATGTTTGATCGGATGCCGGACCGGAGTGTGATCTCGTGGACACTTGTTATCGATGGATACACTCGCTCGAATCGGCCTGTAAAGGCTTTGGCTTTGTTTAGGGAAATGGCTGAAGTTTATGGTATAGAACCTAATGAAGTTACTCTTTTGACTATTTTTCCTGCTATTGCGAATCTTGGGTATGTTATGTTATGTCAATCAGTTCATGGCTATGCAGAGAAGAGAGGATTCAATGAATTTGACATACGAATTACAAATGCACTGATTGATTTGTATGCAAAATGTGGATGCATAGAGGGTTCGATTAAATTCTTCCGGGGGATACCGGATCATAGGAAGAATTTGGTGTCATGGACTTCAGCCATCTCTAGTTTTGCTATGAATGGGATGGGGAGAGAAGCTGTGGAGTGTTTTGAAAGAATGGAGAAGTCAGGGCTGAGGCCGAATCGCGTGACGTTCCTGAGTGTTTTGAATGCTTGTAGCCATGGAGGGTTAGTTGAGGAAGGGCTCAAATTTTTCAATAAAATGGTGAATGATTGTCAACTTGTGCCAGATATCAAGCACTATGGATGTCTAATAGATATGTTGGGGAGAGCAGGGAGGTTAGAAGAAGCAGAAAAGGTTGCTTTGCAGGTGCCTCCTGATGTTGCCAATGTTGTGATGTGGAGGGCACTTTTGGGTGCTTGTAGTGTTCATAACAATGCAGAAATTGGTCAGAGGGTGACAAGGAAAATACTGGAGATGGAGAGAAGACATGGTGGGGATTATGTTCTTATGTCCAATATTCTTGCTGGTGTTGGGAGATTTAAGGATGCTGAGAGGTTAAGGGAAATGATAGATAAGAGAATTGCCTTTAAAGTACCTGGTTACAGTTTAGTCTAA 1641 0.4509 MAEPQGSGSGDHGIVNSSGPRRKGAATKRAITMAPETITTQAPPCGACKFLRRKCISGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGCVSTILALQHQVASLQGELSMVQNQLINSSYTQKFQTFLTYTELDTFTFAFLCQACCANSSCTHFGIQLHSLVFKVGFQFHVYVQTGLVQMYSSFGLLVEAFKVFDEMLERSTVTWNVLISGLVLWGEFELACSMFDRMPDRSVISWTLVIDGYTRSNRPVKALALFREMAEVYGIEPNEVTLLTIFPAIANLGYVMLCQSVHGYAEKRGFNEFDIRITNALIDLYAKCGCIEGSIKFFRGIPDHRKNLVSWTSAISSFAMNGMGREAVECFERMEKSGLRPNRVTFLSVLNACSHGGLVEEGLKFFNKMVNDCQLVPDIKHYGCLIDMLGRAGRLEEAEKVALQVPPDVANVVMWRALLGACSVHNNAEIGQRVTRKILEMERRHGGDYVLMSNILAGVGRFKDAERLREMIDKRIAFKVPGYSLV* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1547 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Aev06g1547 546 ProSiteProfiles LOB domain profile. 43 145 IPR004883 -
Aev06g1547 546 Gene3D Tetratricopeptide repeat domain 339 534 IPR011990 GO:0005515
Aev06g1547 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 432 IPR002885 -
Aev06g1547 546 MobiDBLite consensus disorder prediction 1 28 - -
Aev06g1547 546 Gene3D Tetratricopeptide repeat domain 147 332 IPR011990 GO:0005515
Aev06g1547 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Aev06g1547 546 Pfam Lateral organ boundaries (LOB) domain 44 142 IPR004883 -
Aev06g1547 546 Coils Coil 124 144 - -
Aev06g1547 546 Pfam PPR repeat 233 261 IPR002885 -
Aev06g1547 546 Pfam PPR repeat 207 230 IPR002885 -
Aev06g1547 546 Pfam PPR repeat 442 461 IPR002885 -
Aev06g1547 546 Pfam PPR repeat 339 359 IPR002885 -
Aev06g1547 546 TIGRFAM PPR: pentatricopeptide repeat domain 404 438 IPR002885 -
Aev06g1547 546 TIGRFAM PPR: pentatricopeptide repeat domain 233 262 IPR002885 -
Aev06g1547 546 TIGRFAM PPR: pentatricopeptide repeat domain 264 299 IPR002885 -
Aev06g1547 546 TIGRFAM PPR: pentatricopeptide repeat domain 369 402 IPR002885 -
Aev06g1547 546 PANTHER - 152 258 - -
Aev06g1547 546 PANTHER - 246 546 - -
Aev06g1547 546 Pfam E motif 485 546 IPR046848 -
Aev06g1547 546 Pfam PPR repeat family 262 308 IPR002885 -
Aev06g1547 546 Pfam PPR repeat family 366 414 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1547 Aev-Chr6 11239925 11244438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1547 16 148 AS2 family AT3G03760 72.789 7.24e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aev06g1547 LOB 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1547 - - gmx:100805207 625.55