Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1489 ATGGTGAAGAAGCGGAAGGTCGCACCCAAATCATCTCAATCCGCTGAACCCCCTACCAAGCAACCCCAAATCGAACCCCCGAAACTACAACCACAATACGAAGAAGTTGAAGAAGAAGAAGAAGAAGTAGAAGAAGTTGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGATACAACACAACAACAAGACGAAGATGACGACCCAATCCCGAAGCTTCTAGAACCTTTCGGGAAAGACCAGATCTTGAGCTTACTGTGCGAGGCCGCCGCCAAGCACCGTGACGTGGCTAACCGGATCCGTCGTATTGCCGACGCGGACGCCGTCCACCGAAAGATCTTCGTCCACGGCCTCGGATGGGACACCACCGCCGAAACCCTAATCAATGCGTTCCGTCAGTACGGTGAGATCGAGGATTGCAAGGCCGTCACCGATAAGGTCTCCGGCAAGTCCAAGGGCTACGGATTCATCCTCTTCAAGACCCGCCGCGGAGCACGCAACGCCCTCAAGCAGCCTCAGAAGAAGATCGGAAACCGTATGACGGCGTGCCAGCTGGCATCCATTGGCCCCGTTCAGCAGCAGCCGCAGCAACAGCCTGCAGCCTCTTCGGCAGCTTCTGCCTCGGCGGCGTCGGTTTCAGAATACACGCAGAGGAAGATCTACGTGAGCAATGTTGGTCCCGAATTGGACCCGCAGAAGCTTCTTGGATTCTTCTCGAGGTTCGGGGAGATCGAGGAAGGTCCGATGGGGCTCGATAAGATGACAGGGAAGCCGAAAGGGTTCTGTTTGTTCGTCTACAGGAGCGTTGAGAGTGCGAGGAGGGCGTTGGAGGAGCCGCATAAGGAGTACGAGGGTCACATATTGCATTGCCAGAAGGCGATTGATGGACCCAAGCTTGGCAAGTTTCAGCAGCAGCAACCGCAGCTTGGGAATGTGCAGAGGACGCAGTTTCAGAGGAACGATACTGCTAATTTCGGTGTTGGTGGCGTTGGAGTTGGTGGTGGTGGTGGTGGTGGTGTGCAGGGGCATCTGATGGCACCGGCCACGGCGCAGCCGATGGGGATCAGTCAGGTGGCAGCGCAGCAGCTGAATCCGGCAATTGGGCAGGCGCTGACAGCACTGCTTGCTTCGCAGGGCGCTTCTTTGGGGTTAACTAATCTATTGGGCGGTTTGGGGTCGACTGCCGGGGCGGTTAATTCCGGGATTCCGGCAGCAGGGCACGGGTTGCAGGGTGGTTACAGTGCACAGCCAAATATAAGTCCTGGTGTCATTGGAGGATACGCGAATCAGGTGGGTTTGCAGGCAGTGTATCCGAACCAGCAGGTGGGGCAGGGTGGTACCGGAAGAGGGCAGCATGGTGGTGCTGGTGCTGGGCAGTATGGTGGCGTTGCCCCTTATATGGGGCACTAG 1431 0.5639 MVKKRKVAPKSSQSAEPPTKQPQIEPPKLQPQYEEVEEEEEEVEEVEEEEEEEEEEEEEEEEEEDTTQQQDEDDDPIPKLLEPFGKDQILSLLCEAAAKHRDVANRIRRIADADAVHRKIFVHGLGWDTTAETLINAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVQQQPQQQPAASSAASASAASVSEYTQRKIYVSNVGPELDPQKLLGFFSRFGEIEEGPMGLDKMTGKPKGFCLFVYRSVESARRALEEPHKEYEGHILHCQKAIDGPKLGKFQQQQPQLGNVQRTQFQRNDTANFGVGGVGVGGGGGGGVQGHLMAPATAQPMGISQVAAQQLNPAIGQALTALLASQGASLGLTNLLGGLGSTAGAVNSGIPAAGHGLQGGYSAQPNISPGVIGGYANQVGLQAVYPNQQVGQGGTGRGQHGGAGAGQYGGVAPYMGH* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1489 476 MobiDBLite consensus disorder prediction 34 71 - -
Aev06g1489 476 CDD RRM_RBM24_RBM38_like 118 193 - -
Aev06g1489 476 PANTHER GEO13361P1-RELATED 25 476 - -
Aev06g1489 476 Coils Coil 476 476 - -
Aev06g1489 476 MobiDBLite consensus disorder prediction 1 82 - -
Aev06g1489 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 327 IPR000504 GO:0003723
Aev06g1489 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 294 IPR000504 GO:0003723
Aev06g1489 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 186 IPR000504 GO:0003723
Aev06g1489 476 CDD RRM_RBM24_RBM38_like 225 300 - -
Aev06g1489 476 Coils Coil 29 73 - -
Aev06g1489 476 SUPERFAMILY RNA-binding domain, RBD 118 202 IPR035979 GO:0003676
Aev06g1489 476 SUPERFAMILY RNA-binding domain, RBD 206 327 IPR035979 GO:0003676
Aev06g1489 476 Gene3D - 29 200 IPR012677 -
Aev06g1489 476 Gene3D - 201 316 IPR012677 -
Aev06g1489 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Aev06g1489 476 PANTHER - 25 476 - -
Aev06g1489 476 SMART rrm1_1 119 191 IPR000504 GO:0003723
Aev06g1489 476 SMART rrm1_1 226 298 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1489 Aev-Chr6 10634554 10635984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1489 224 310 C2H2 Transcription Factor Family AT2G19380 36.364 1.25e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1489 K12741 - gmx:100784200 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g1489 06 10634554 10635984 Aev06g1489 06 10634554 10635984 ECH