Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1429 ATGGACAGCGACGACGACGCCACCAACCACCACGCCTCCGACGAGCCCCACCTGTTGGGCTTCATCATCGCCGACATTGTTGGCCTCAAACACTACTCCGGCACCGTCACCGGCCGCGAGATGGTGGGCCTTGTCCGCGAGCCCCTCAACCAACACGACCAGAACGCCATCAAGGTCCTCAACACCCGCTCCCTCCAAGTCGGCTTCATCGCTCGCACCGTCGCCGCCGTCCTCTCCCCTCTCATCGACTCCCAACTCATCATCGTCGAAGCCATCGTCCCCCACTCCCGCTCCCAATCCAACCGCTTCCGCCTCCCCTGCCAAATCCACATCTTCACCCAAATCTCCTTCTTCTCCACCGTCCGCGACCACATCGTCGGCGCCGGCCTCCAACTCGTATCCCAAGACGATGCTTCCTTCACCCTCTCCGAGTCCCAGGCCGTGAAAGAAACCAAAGCCCAGAAGATGGTCAAGAGCGTCGACCAGATTTTCAGGCTTGTGGATGAGAGTTTGTCGACCAAGGAGCGTGTTTCCCACGCGATTGAGCCCCCTCGTGAGGGTTCTGGTTCGCGAAAGAGGCGAAAGATTGAGGGTGAGGTTTCTTGTGATGGGTTGGTGACAAATGCTACATTGGTGGTGTGTCCTCCTTCTGTGTTTTCGACATGGATAACGGAGTTGGAGCAGCACACTGTTCCTGGATCATTGAGGACTTACATATATTATGGTGATAGGAGGACTGATAATGCTGATGTGCTCAAGAAGCATGATTTGGTGTTGACCACTTATGCTACATTGTCCTCTGAGGATCATGTTGATGATGCTCCGGTGAAGAAGCTCAATTGGAGGAGGATTATACTGGATGAGGCTCATACCATCAAGAATTACAATGCTCTGCAGACTAAGGCGGTAATTAGGCTGAATGCTAAGCGGAGGTGGGCTGTAACGGGGACGCCAATACAGAATGGTTCGCTGGATTTGTTCTCTTTGATGGCGTTCTTGCATTTTGAGCCATTCTCCATAAGGAGCTACTGGAAAACCTTCGTGCAACGGCCTCTTAATATGGGACTCGAACGTGGGCTCTCGCGGTTGCAGGTTTTGATGGCTGCAATTGCATTACGAAGAACAAAAGACAAAGGATTGGCTGGGCTGCCACCAAAGACCATAGAGACGCATTATGTTGAACTTGATTCAGAAGAACGTGAGTTGTACGATCGGGTGGATGAGGTTTCAAGGAACACAATGTTGAGTTATATTAGAAACGATGGAATAGTGCGCCATTATGCTACCATACAAAGTATGATTCAACGACTTCGCCAAGTCTGTACCGATATGGCTTTGTGCCCTAAAGATTTTGGGTCGTTATCCCTTTCAACTAATATTGGAGATATTTCCAAAAAGCCAGAGTTGCAGGAAAAGTTGATTGAGATTCTGCAAGATGGTGAAGATCTTGGCTGTCCAATATGTTTATCTCCTTCAATGGATATTGTTATTACACGGTGTGCTCACATTTTCTGCCACCACTGCATTCTGAAAGCTCTCCGGTGCAGCCATTCCCGTTGTCCTCTTTGCCGTTGTCACCTCGTGGAAGAATCTGATTTGTTCTCAGCCCCTGCTGAGTCTACCAGGCCTGACAGTTCTGGACCATCCTCGTCTTCGATAACAAGGGCATCATCCAAAACGTCTGCATTGATAAAACTTCTTGTAGAATCCAGAGATCAAAACCCAGCTGTGAAATCCATTGTCTTTTCCCAATTCAACAAAATGTTATCATTGCTGGAAGATCATTTGAAAGCGGCAGGTTTCAAGACTCTGCTTCTCAATGGTTCGATGGATGCTAATGCAAGGGCTCATGTCATCGAGCAGTTTCAGAGCGGTGGAAGAGATGGGGCAACGGTTCTGCTTGCAAGCCTTAGAGCTTCAAGCGCAGGTATAAATCTCACGGCTGCATCGAGGGTTTACTTCATGGACCCGTGGTTGAACTCTGCTGTTGAGGAACAGGCGATGGATCGCGTTCATCGCATTGGGCAGAAAGAGGCTGTGAAGATTGTCAGGTTCATTGCTCAAAACAGCATCGAAGAGAGGATATTGAAGTTGCAGGAGAAGAAGACAGAACTAGCAAAGAAAAAAATTGGAGGAGGATCATCGGATTTTGGCATGAGCGGCATTGATCTCCGTTTCCTTATCAATGTATGA 2193 0.4929 MDSDDDATNHHASDEPHLLGFIIADIVGLKHYSGTVTGREMVGLVREPLNQHDQNAIKVLNTRSLQVGFIARTVAAVLSPLIDSQLIIVEAIVPHSRSQSNRFRLPCQIHIFTQISFFSTVRDHIVGAGLQLVSQDDASFTLSESQAVKETKAQKMVKSVDQIFRLVDESLSTKERVSHAIEPPREGSGSRKRRKIEGEVSCDGLVTNATLVVCPPSVFSTWITELEQHTVPGSLRTYIYYGDRRTDNADVLKKHDLVLTTYATLSSEDHVDDAPVKKLNWRRIILDEAHTIKNYNALQTKAVIRLNAKRRWAVTGTPIQNGSLDLFSLMAFLHFEPFSIRSYWKTFVQRPLNMGLERGLSRLQVLMAAIALRRTKDKGLAGLPPKTIETHYVELDSEERELYDRVDEVSRNTMLSYIRNDGIVRHYATIQSMIQRLRQVCTDMALCPKDFGSLSLSTNIGDISKKPELQEKLIEILQDGEDLGCPICLSPSMDIVITRCAHIFCHHCILKALRCSHSRCPLCRCHLVEESDLFSAPAESTRPDSSGPSSSSITRASSKTSALIKLLVESRDQNPAVKSIVFSQFNKMLSLLEDHLKAAGFKTLLLNGSMDANARAHVIEQFQSGGRDGATVLLASLRASSAGINLTAASRVYFMDPWLNSAVEEQAMDRVHRIGQKEAVKIVRFIAQNSIEERILKLQEKKTELAKKKIGGGSSDFGMSGIDLRFLINV* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1429 730 Pfam SNF2-related domain 130 444 IPR000330 GO:0005524|GO:0140658
Aev06g1429 730 SMART HIRAN_2 19 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aev06g1429 730 Gene3D - 384 723 IPR027417 -
Aev06g1429 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 562 725 IPR001650 -
Aev06g1429 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 534 IPR013083 -
Aev06g1429 730 SMART ring_2 485 523 IPR001841 -
Aev06g1429 730 MobiDBLite consensus disorder prediction 175 194 - -
Aev06g1429 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 374 IPR027417 -
Aev06g1429 730 CDD RING-HC_RNF10 485 523 - -
Aev06g1429 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 719 IPR027417 -
Aev06g1429 730 Pfam Helicase conserved C-terminal domain 559 675 IPR001650 -
Aev06g1429 730 Pfam Zinc finger, C3HC4 type (RING finger) 485 523 IPR018957 GO:0046872
Aev06g1429 730 SMART helicmild6 590 675 IPR001650 -
Aev06g1429 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 336 IPR014001 -
Aev06g1429 730 Coils Coil 688 708 - -
Aev06g1429 730 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 4 173 - -
Aev06g1429 730 Gene3D - 194 375 IPR038718 -
Aev06g1429 730 MobiDBLite consensus disorder prediction 537 556 - -
Aev06g1429 730 Pfam HIRAN domain 20 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aev06g1429 730 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 205 713 - -
Aev06g1429 730 SUPERFAMILY RING/U-box 474 531 - -
Aev06g1429 730 ProSiteProfiles Zinc finger RING-type profile. 485 524 IPR001841 -
Aev06g1429 730 SMART ultradead3 100 348 IPR014001 -
Aev06g1429 730 ProSitePatterns Zinc finger RING-type signature. 500 509 IPR017907 -
Aev06g1429 730 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 205 713 - -
Aev06g1429 730 CDD SF2_C_SNF 559 686 - -
Aev06g1429 730 MobiDBLite consensus disorder prediction 538 556 - -
Aev06g1429 730 Gene3D - 10 132 - -
Aev06g1429 730 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 4 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1429 Aev-Chr6 9994910 9998133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1429 188 708 RAD5 or RAD16-like Gene Family AT5G05130 57.935 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev06g1429 SNF2_N 3.9e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1429 K15711 - vvi:100263696 634.795