Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1368 ATGGTGATCGTAACAGCCTCAGTTGCAGAAGAAATTCATTGTGCGCGGAAGCTCATAATTCAATATATCCGAAGCTGCATGAAGATTGAGGAGATTTTAGAGCGGTTACAACAAACTCAAAATCCTGAAATTGGAATAAGTGTTTTGCGATATCTCCTTCTGAAGAATCCAGAGTTCTTTACCGGTTATTATGAGTGGATGAAGGAGAGAGACAAGTACTTTCAGATGTGTGAGTTGAACAAGGTGGGTCAATTGCAGTCTGAGCTGAGCTTGGTCTACCAAGTGGTCACGTCATCATCACCGTTGTCGCCGTCGTCGGAATTAATAATACCTTCTAAAAATACTAATATATGTGTTAACGACGGTTCATGTGTTCCGATTGGCGTGGAACCCCATAATTTGCATAGTCCAGTTAATAATATTAACACTATGGTGATCGTAACAGCCTCAGTTGCAGAAGAAATTCACTGTGCGCGGAAGCTCATAATTCAATATATCCGAAGCTGCATGAAGATTGAGGAGATTTTAGAGCGGTTACAACAAACTCAAAACCCTGAAATTGGAATAAGTGTTTTGCAATATCTCGTTCTGAAGAATTCAGAGTTCTTTAACGGTTATAACAGACTTAGCTCCTCCGCCGCTGCAGTTTCTATTCCCGCACCATCATTGTCGTCATCTGAACCGCGCGGCTTGATGGAGGCGGAAGCGAAGTTAAACGACGCATTGAAGAAAACCACGCAGCGGTACGAAGAAGCAAGCGAAGACAGAAGCTTTGCAGAGCTCGGAGTAGATGCTCGTCTCGTTCATGCCTTACTTAAGAAAGGAATCGACAAACCCTCTCCAATTCAGACCGTCGCTATTCCACTCATTCTGGAAGGTAAGGATGTGGTTGCCCGTGCAAAGACGGGTTCTGGGAAGACTTTTGCTTATCTTCTCCCTATGCTTCAGAAACTGTTCAGTGGTAATGTTGATAGGAACAAGCTTGCGCCCAATGCTTTTGTTCTTGTCCCAACTCGCGAGCTGTGTCAACAGGTTTATTCGGAGGTCTTGTCTCTCATTGAGTTATGTAAAGTTATGCTGAAAGTCGTGCAATTAAATAGCAATATGCAAGCTTCTGACCTGCGGGCTGTGCTGACTGGACCCCCTGATATTTTGATCTCTACACCTGCTTGCATAGCAAAGTGCCTGTCTAGCGGCGTACTTCAACCGGCATCCATTAAGGATTCACTTGAAACTCTTGTCCTTGATGAGGCAGATCTTTTATTATCATATGGATATGAAAATGATTTAAAATCTTTTCAGCCTCATGTACCCAGAAGTTGTCAGTGTCTTCTTATGTCTGCAACATCAAGCGCTGATGTAGACAAACTGAAGAAGTTGATTCTACACAATCCCTTCATTTTGACTTTGCCTGAAGTAGGAAACCATAAGGATGATGTCATCCCTAAAAATGTTGAGCAGTTCTGGATCTCATGTCCTGCCAGTGACAAGTTGCTCTACATCCTTTCTATGTTGAAGCTTGAGTTGGTCCAAAAGAAAGTTCTGATATTCACTAATACAATAGACATGAGTTTCAGATTGAAATTATTTTTAGAAAAGTTTGGGATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCTCGTGTCCACATTCTTGAGGAGTTCAATGCTGGTCTGTTTGATTATCTAATTGCAACTGATATCAGTCAATCAAAGGAGATGGATGAAGCATCTAAGGAGAGCAATGGTGGATCACGAAAATCTAGAAAGCATGCTAAGCCAAAATTAGATTCTGAATTTGGAGTAGTCAGAGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTCGAAATGCCTCAAAGTGTTGCAGGATATGTGCACCGTATTGGACGTACAGGAAGAGCATACAGTTCTGGTGCTTCTATCTCTCTGGTTTCAACAGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAAAACAAAGGCTCAAACTCAATTGCTGAATTTCCCTACCTCACCAAGGAAGCAGTTGAATCTTTACGGTACAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGAAGCACGATTCCTGGATTTAAGAAATGAATTTCTTAACTCTGAAAAGTTAAAGGCCCACTTTGAAAGTAATCCAAGAGACTTAGATCTATTGAAGCATGACAAAGTTTTGAGCAAGAATGCCCCTCCTTCGCATCTACGCGACGTGCCTGAGTACCTATTAGACAAAACAACCCAAGAGGCTAGGGCAATGGTCAAACTTGCTAGGGATGCAAATGGAAATAACCATCGCCGCAAGGCGGGATCCAAGAGAAAATCAAGAAAAGGTGGAGGAGACCCTCTGAAGGCTATTTCTGCTGTGGGATCAAAAAGACCGCACAAAAAGAGTGGTGCAAGCCATAAAACTAGCAGTGATAGACGTGGACACAAAAAGATGACGGCTATTTGA 2502 0.4197 MVIVTASVAEEIHCARKLIIQYIRSCMKIEEILERLQQTQNPEIGISVLRYLLLKNPEFFTGYYEWMKERDKYFQMCELNKVGQLQSELSLVYQVVTSSSPLSPSSELIIPSKNTNICVNDGSCVPIGVEPHNLHSPVNNINTMVIVTASVAEEIHCARKLIIQYIRSCMKIEEILERLQQTQNPEIGISVLQYLVLKNSEFFNGYNRLSSSAAAVSIPAPSLSSSEPRGLMEAEAKLNDALKKTTQRYEEASEDRSFAELGVDARLVHALLKKGIDKPSPIQTVAIPLILEGKDVVARAKTGSGKTFAYLLPMLQKLFSGNVDRNKLAPNAFVLVPTRELCQQVYSEVLSLIELCKVMLKVVQLNSNMQASDLRAVLTGPPDILISTPACIAKCLSSGVLQPASIKDSLETLVLDEADLLLSYGYENDLKSFQPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDDVIPKNVEQFWISCPASDKLLYILSMLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIKSAVLNAELPQNSRVHILEEFNAGLFDYLIATDISQSKEMDEASKESNGGSRKSRKHAKPKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYSSGASISLVSTDEMDTLEEIRSFVGDDENKGSNSIAEFPYLTKEAVESLRYRAEDVAKSVTKIAVREARFLDLRNEFLNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPSHLRDVPEYLLDKTTQEARAMVKLARDANGNNHRRKAGSKRKSRKGGGDPLKAISAVGSKRPHKKSGASHKTSSDRRGHKKMTAI* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1368 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 664 IPR027417 -
Aev06g1368 833 PANTHER RNA HELICASE 239 784 - -
Aev06g1368 833 Gene3D - 229 470 IPR027417 -
Aev06g1368 833 MobiDBLite consensus disorder prediction 576 595 - -
Aev06g1368 833 Coils Coil 235 255 - -
Aev06g1368 833 SMART ultradead3 275 488 IPR014001 -
Aev06g1368 833 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 239 784 - -
Aev06g1368 833 CDD DEADc_DDX56 263 470 - -
Aev06g1368 833 Pfam DEAD/DEAH box helicase 281 457 IPR011545 GO:0003676|GO:0005524
Aev06g1368 833 Gene3D - 473 678 IPR027417 -
Aev06g1368 833 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 685 IPR001650 -
Aev06g1368 833 MobiDBLite consensus disorder prediction 816 833 - -
Aev06g1368 833 Pfam Helicase conserved C-terminal domain 496 639 IPR001650 -
Aev06g1368 833 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 287 468 IPR014001 -
Aev06g1368 833 SMART helicmild6 525 639 IPR001650 -
Aev06g1368 833 CDD SF2_C_DEAD 485 648 - -
Aev06g1368 833 MobiDBLite consensus disorder prediction 773 833 - -
Aev06g1368 833 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 256 284 IPR014014 GO:0003724
Aev06g1368 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 469 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1368 Aev-Chr6 9364171 9379337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1368 257 678 Eukaryotic Initiation Factors Gene Family AT3G19760 25.592 2.49e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1368 K14810 - gmx:100800749 937.947