Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1344 ATGGATCACAGAACAAAATCGAAGGACTCGCTCTCCTACTCCACTCTCTTCAATCTCGAGTCTTTGGTGAACTTTCGACTTCCAGAACAAGATGATGATTTTGATTATTACGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGGCGGGCAATTGCAAACCACAATAATGGGAATATGCGCGGAAGGGAGGTGAATTCATTGAAGAAGAGGAGGCAGTCTCAAAACAGTGACAACGAGGAAAGGAGCAGTTTCTACGGTACACACATGACGGAGGAGCATTATCGGTCAATGCTTGGAGAGCATATTCAGAAATACAAGAGGAGGAGGTTTAAGGAGACCTCATCTAGTCCTGCCCAAAATCAGGTTGCTGCTCCACCTCCCAAAAGTGGCACAGCCTTAAAAGCTCGCAAGTCAGGGAATGTGCACAGGGGAGGATTGCATGCTGCAGAGGCTACGTCCGAATGGATGAATGATTCCAGTTCTCAGAAATTGGGAAATTTCCGTGATTCAAACTCTGTGCAGCAATATGGCATTCATAGGACTGCATATGAACCTGCTTCTTTGGATATTGGGGAAGGTATCACTTACAAGATTCCCCCAATTTATGAAAAGCTTGCTGCAATTTTAAACCTTCCAAGCTTCTCGGATGTCCATGTTAAGGATTTCTACTTAAAGAGTACCTTGGATTTGGGTTCCCTAGCTGAAATGATGGGTGCTGATAAAAAAATTGAGAAGAGAAACCGGATTGGCATGGGGGAACCCATACCCCAATATGAATCACTTCAGGCACGATTAAAGGTCATGTCAGCTTCTAATTCAGCTCATAAATTCAGCCTGAAAGTATCCGATGCTGGTTTGAATTCCTCCATTCCAGAGGGAGCGGCTGGAAGCATAAAGCGATCTATTTTGTCTGAGGGCGGTGTGTTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGCGACACATATGAGATCATTGAACGAAGCCTACCTAAGAAGCAAAAGGTGAAAAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGAATTGGAAAGATATGGGTGAACATTGTAAGGAGAGATATACCAAAGCATCATAGGAATTTCACTGGTTTTCATCGAAAGCAGCTTATTGATGCCAAGAGGGTTGCAGAGAACTGTCAAAGAGAGGTTAGACTGAAAATTAGTAGATCACTTAAATGGACGAGGACTGCGACTATACGCACACGAAAACTAGCTAGAGACATGTTGCTATTCTGGAAACGAATAGATAAGGAGATGGCCGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAACTGCGTGAAGCAAAGAGACAGCAGCAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTGTCGGAAGCTTTGCCCAAGGTTGATGAGAGCACTAGTGACCAAGACGCACAGATTGACTCTTCAGATGCTGGGCCCAGCGAGGAGGAAGATCCGGAAGAGGCCGAGTTGAAAAAGGAAGCTCTGAGGGCTGCTCAAGAAGCTGTTTCTAAACAGAAAATGTTGACTAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAGGTTGATGATGCTGATTCACTTCCACCAGAAGTTGCTGGAGCAAGTAATATTGATTTGCAAACCCCCTCAACCATGCCAGTGGCGTCCACTGTTCGGACACCAGAATTGTTTAAAGGTTGTCTCAAAGAGTATCAGCTAAAAGGTCTTCAGTGGCTAGTCAATTGTTATGAGCAGGGTTTAAATGGAATTCTTGCTGATGAGATGGGACTTGGAAAGACAATTCAGGCTATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCATTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTTGAGCGTTTTTGCCCTGAACTGAAAAGACTTCCTTATTGGGGCGGGGTAGCAGAGCGGTCAGTGCTTAGGAAAAGTATTAACCCAAAAGATCTTTATCGTAGGGAAGCTAAATTTCATGTTCTAATCACAAGCTATCAGTTATTAGTAACTGATGAGAAGTTTTTTCGGCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAAGCTATCAAAAGTGCAGCCAGTATAAGGTGGAAGACCCTCCTCAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTCAATGAATGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGGGGTACCTTGAATGAGCACCAATTGAATAGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAGAAAGATGTGATTTCTGAACTGACTACAAAAACTGAGGTTACAGTGCATTGCAAGTTGAGCTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAAAACAAGATATCTCTTGCTGAGCTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTTTGAATTTAATGAACATTGTTATTCAATTAAGGAAGGTTTGCAACCATCCAGAATTATTTGAAAGGAGTGAGGGAAGCACCTACCTTCACTTTGGAGCAATTCCAAATTCCCTTCCACCTCCTCCATTCGGGGAGTTAGAGGACGTGCATTATTCTGGTGGTCACAACCCCATATCGTATGAGATACCAAAACTTGTATATCGAGAAATTATGCAGAGTTCTGAAACTCTCTGTTCAGCTGTTGGTCATGGTGTCTACAGAGAATCTTTTAAGAAGCATTTTAATATTTTTAGACAAGAAAATGTTTATCGATCTGTTTTCGCAGAAGATATGCATGTTAACAGTGGAAACTTTGGTTTTACCCATATGATGGATTTGTCTCCACAAGAGGTGACATTTATGGCTACTGGTTCTTTTATGGAGCAATTATTATTTTCTATGATGAGATTGGAACAAAAATTCATTGATGAAGTTGTAGACTCTGTTATGGAGACCATAGATGATGATCCAGAATGTAATTACCTTGAGAAAGGGAAAGTTAGAACTGTTACACGTATGTTATTGATGCCATCAAAATCTGAGATTAAGTTTCTTCAAAGAAAATTGCCAACCGGGCCCAGCCATGATCCTTTTGAGGCCTTGGTAGTCTCACACCAGGATAGACTCTTGTCAAATGCAAAGCTTCTTCACTCAGCTTATTCATATATCCCACCAAGTAGAGCTCCCCCAATTGGTGTTCACTGTTCGGATAGAAACTTCTACTACAAAATGATTGAAGAGTTCCATGATCCTTGGGCTAAGAGGTTGTTTGTGGGATTTGCACGCACTTCTGAATGCAATGGGCCTAGAATGCCAGATTCTCCTCATTATTTAATTGAAGAGGTAGATTCTGAGCTACCTGTTTCTCAGCCTGCTCTACAGTTAACACACAGTATTTTTGGGTCGTCTCCACCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGTTGCAAACACTTGATATATTATTGAAACGCTTGCGAGCAGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTGAGACTTGATGGATCATCTACTATTCAGGATCGCAGAGACATGGTCAGAGATTTCCAGAATAGATCTGATATTTTTGTGTTCTTATTGAGTACAAGAGCTGGTGGTTTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACTAGAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAGGAAAAGATTCTTCTTAGAGCAAGCCAGAAAAGTACTGTGCAGAACCTTGTGATGACAGGGGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATCCTCAGTTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGGAAAGGATAAGCAAAAGAAAAAACAACCTGCGAAAGGTATTTGGTTAAATGAAGAAGGTGATGCATCTCTTCAAGATTTAACAAACTCGGTAACCCAGGCTCCTGTAGATTATGACAATTCCATGGAACCAGAGGGAGCAAAGTCCAGTAATAAAAAGAGAAAATCTGGGTCAGATAAGCAAACTTCGAAGTCAAAGAATTCTCAGAAGATGAGTGAGTTCAGTCCTATGGAAGACGAATTGGTTGAAATTGATGCCCAGAAACCCAAGAGACCAAAGAGGACAAAGAAGAGTGTGAATGAAAGATTTGAAGGTGCTGTTACTGGGACGGCTGCCGCAGCCACAGCTGCAGTCTTAGAATGGACTCAACAGCCACCCCCACAAGATTTTGTTGCTGATGATCTAGAGCAGAAACAAGCCTAG 4584 0.4204 MDHRTKSKDSLSYSTLFNLESLVNFRLPEQDDDFDYYGNSSQDESRDSQGRAIANHNNGNMRGREVNSLKKRRQSQNSDNEERSSFYGTHMTEEHYRSMLGEHIQKYKRRRFKETSSSPAQNQVAAPPPKSGTALKARKSGNVHRGGLHAAEATSEWMNDSSSQKLGNFRDSNSVQQYGIHRTAYEPASLDIGEGITYKIPPIYEKLAAILNLPSFSDVHVKDFYLKSTLDLGSLAEMMGADKKIEKRNRIGMGEPIPQYESLQARLKVMSASNSAHKFSLKVSDAGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERIGKIWVNIVRRDIPKHHRNFTGFHRKQLIDAKRVAENCQREVRLKISRSLKWTRTATIRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSEALPKVDESTSDQDAQIDSSDAGPSEEEDPEEAELKKEALRAAQEAVSKQKMLTSAFDTECLRLRQVDDADSLPPEVAGASNIDLQTPSTMPVASTVRTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVAERSVLRKSINPKDLYRREAKFHVLITSYQLLVTDEKFFRRVKWQYMVLDEAQAIKSAASIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLHFGAIPNSLPPPPFGELEDVHYSGGHNPISYEIPKLVYREIMQSSETLCSAVGHGVYRESFKKHFNIFRQENVYRSVFAEDMHVNSGNFGFTHMMDLSPQEVTFMATGSFMEQLLFSMMRLEQKFIDEVVDSVMETIDDDPECNYLEKGKVRTVTRMLLMPSKSEIKFLQRKLPTGPSHDPFEALVVSHQDRLLSNAKLLHSAYSYIPPSRAPPIGVHCSDRNFYYKMIEEFHDPWAKRLFVGFARTSECNGPRMPDSPHYLIEEVDSELPVSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIQDRRDMVRDFQNRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDPQLEQKLKEIPLQGKDKQKKKQPAKGIWLNEEGDASLQDLTNSVTQAPVDYDNSMEPEGAKSSNKKRKSGSDKQTSKSKNSQKMSEFSPMEDELVEIDAQKPKRPKRTKKSVNERFEGAVTGTAAAATAAVLEWTQQPPPQDFVADDLEQKQA* 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1344 1527 SMART helicmild6 1234 1317 IPR001650 -
Aev06g1344 1527 Pfam DNA-binding domain 351 480 IPR020838 GO:0003677
Aev06g1344 1527 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1489 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Aev06g1344 1527 MobiDBLite consensus disorder prediction 1421 1494 - -
Aev06g1344 1527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Aev06g1344 1527 Gene3D - 828 898 IPR027417 -
Aev06g1344 1527 Coils Coil 428 467 - -
Aev06g1344 1527 Pfam Helicase conserved C-terminal domain 1208 1317 IPR001650 -
Aev06g1344 1527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Aev06g1344 1527 CDD SF2_C_SNF 1196 1328 - -
Aev06g1344 1527 Gene3D - 1174 1421 IPR027417 -
Aev06g1344 1527 Gene3D - 586 827 IPR038718 -
Aev06g1344 1527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1208 1358 IPR001650 -
Aev06g1344 1527 PANTHER HELICASE SRCAP-RELATED 16 1489 - -
Aev06g1344 1527 MobiDBLite consensus disorder prediction 1507 1527 - -
Aev06g1344 1527 MobiDBLite consensus disorder prediction 1433 1448 - -
Aev06g1344 1527 MobiDBLite consensus disorder prediction 65 79 - -
Aev06g1344 1527 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Aev06g1344 1527 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Aev06g1344 1527 MobiDBLite consensus disorder prediction 109 144 - -
Aev06g1344 1527 MobiDBLite consensus disorder prediction 41 64 - -
Aev06g1344 1527 SMART ultradead3 586 781 IPR014001 -
Aev06g1344 1527 MobiDBLite consensus disorder prediction 488 519 - -
Aev06g1344 1527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1382 IPR027417 -
Aev06g1344 1527 MobiDBLite consensus disorder prediction 33 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1344 Aev-Chr6 9161235 9171163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1344 611 906 RAD5 or RAD16-like Gene Family AT5G43530 28.363 6.18e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev06g1344 SNF2_N 8.5e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1344 K11665 - gmx:100780615 2506.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g1344 06 9161235 9171163 Aev06g1344 06 9161235 9171163 ECH