Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1272 ATGGAGCAAGCTACGGGAGCGTTACGTGGTGGATCCACTCAGGACGACGTCGTATTGGAGTCCATTCAATTCAACGAAGAAATCCGGGGAATCATGGCACCGGCGCCGGCGCCGGAAAACGCCAGCTCCTTCACCGCGCTTCTGGAGCTCCCGCCGACGCAGGCCGTCGAGCTCCTCCACTCGCCGGACTGCGACGCCGCATCCTCAGCTCGGAAACCGCCGTGTCACGTCAGCGCGTCGCAGAAAACATACCTTTTAGATTCCTTCGGCGCCAATTTGACCTTCCCTTCCAACGCTGCGCTGATCGAACGCGCCGCCAAGTTCTCCGTCTTCGCCGGCGAGAATTCGCCGCCAGAGGAGGCTCGCCTCGCTCCTTCCACCGGCTCCGGTGCGGTTAAGAACGAGCCACAGGAGACCGATTCGAACCCTTCCTCCACGCAAGGCTGCGTTTCGGATCCCGTGGTTGAGAACAAGAATCAGAGAACAGCGAAGAGGAAGGAGCGAGAGAAGAAGGCTAAGGGATCGTCGAAGAAGAGCAAAAGCGTCGCCGATGAAACTTCTGGCGACGGCGAAAAGCTTCCCTACGTTCATGTTCGAGTTCGTCGAGGCCAAGCCACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATCAACGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACAGCGTTGGTTCTGGATGAAATCATCAACCATGTGCAATCTTTACAACGTCAAGTGGAGTTCTTGTCAATGAAACTGGCAACTGTTAACCCAAGAATTGATTTCAGCCTAGATAGCTTATTGGCTGCTGATGGGTCATCCGTAATGGACAGCAACTTAACTAGCATGGTTACTCCTCTCATGTGGCCGGAAATCCCATTCAACAGTAATAGACAGCATTATCAACAACAGTGGCAACTTGATGCATTCCACCAACCGCTTTGGGGGAGGGAAGAAGACAACCACAACTTCATGACTCCAGAAAACTCACTTTTGAGTTACGACTCATCAGCAAATTCCGCATCTCTGCATTCAAATCAGCTGAAGATGGAGCTGTGA 1095 0.5306 MEQATGALRGGSTQDDVVLESIQFNEEIRGIMAPAPAPENASSFTALLELPPTQAVELLHSPDCDAASSARKPPCHVSASQKTYLLDSFGANLTFPSNAALIERAAKFSVFAGENSPPEEARLAPSTGSGAVKNEPQETDSNPSSTQGCVSDPVVENKNQRTAKRKEREKKAKGSSKKSKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLATVNPRIDFSLDSLLAADGSSVMDSNLTSMVTPLMWPEIPFNSNRQHYQQQWQLDAFHQPLWGREEDNHNFMTPENSLLSYDSSANSASLHSNQLKMEL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1272 364 Coils Coil 244 264 - -
Aev06g1272 364 MobiDBLite consensus disorder prediction 130 157 - -
Aev06g1272 364 MobiDBLite consensus disorder prediction 114 195 - -
Aev06g1272 364 Pfam Helix-loop-helix DNA-binding domain 208 255 IPR011598 GO:0046983
Aev06g1272 364 MobiDBLite consensus disorder prediction 174 195 - -
Aev06g1272 364 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 17 364 IPR024097 GO:0006355
Aev06g1272 364 CDD bHLH_AtBPE_like 194 279 - -
Aev06g1272 364 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 17 364 - -
Aev06g1272 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 254 IPR011598 GO:0046983
Aev06g1272 364 Gene3D - 201 273 IPR036638 GO:0046983
Aev06g1272 364 SMART finulus 210 260 IPR011598 GO:0046983
Aev06g1272 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 273 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1272 Aev-Chr6 8468608 8473542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1272 11 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.697 1.66e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev06g1272 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1272 - - gmx:100814124 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g1272 06 8468608 8473542 Aev06g1272 06 8468608 8473542 ECH
Aev06g1272 06 8468608 8473542 Aev02g1551 02 17167735 17174260 PCT