Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1261 ATGGCTTACGCAGCTATGAAGCCCACCAAACCCGGCTTGGAGGAGCCCCAAGAGCAGATCCACAAGATCAGGATCACCCTCTCCTCCAAGCACGTCAAAAACCTCGAGAAGGTTTGCTCTGACTTGGTTCGTGGTGCTAAGGACAAGAGACTCAGGGTTAAGGGACCTGTGAGGATGCCCACTAAGGTTCTTCACATCACCACCAGAAAGTCCCCTTGTGGTGAAGGTACCAACACCTGGGACAGATTTGAACTCCGTGTTCACAAGAGGGTCATTGACCTATACAGTTCCCCAGATGTGGTAAAGCAGATTACCTCAATCACAATCGAACCTGGTGTCGAGGTTGAGTTTGCCCTGAACACAAGACCCAAACGAGTGGTAACTGGGCCTGGGAGGTTGGTTATTAAAGGAAAGGTCAAGAGAATCTCTAGATTCATTTTCTTAGGTGGGGCAACAAGTCAGTCAGGTAGGTACTGGGCCTCAGATATTGGTGAGCCTGAGGAATTCGGGGCCTGGGGATGGGATCTGAATGGCTACTGCGTCGTTTTGTTTTCCCCAATTGGGCCAATGAGGCTTGCTGGAACGATCCGAACGGAGTCTGGGATTGGGCCTGTTAGCTTATGA 624 0.508 MAYAAMKPTKPGLEEPQEQIHKIRITLSSKHVKNLEKVCSDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEFALNTRPKRVVTGPGRLVIKGKVKRISRFIFLGGATSQSGRYWASDIGEPEEFGAWGWDLNGYCVVLFSPIGPMRLAGTIRTESGIGPVSL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1261 207 Hamap 30S ribosomal protein S10 [rpsJ]. 20 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aev06g1261 207 Gene3D Ribosomal protein S10 domain 6 119 IPR036838 -
Aev06g1261 207 PANTHER RIBOSOMAL PROTEIN S10-RELATED 1 119 - -
Aev06g1261 207 SUPERFAMILY Ribosomal protein S10 22 117 IPR036838 -
Aev06g1261 207 TIGRFAM uS10_euk_arch: ribosomal protein uS10 21 118 IPR005729 GO:0003735|GO:0006412|GO:0015935
Aev06g1261 207 SMART Ribosomal_S10_2 24 118 IPR027486 -
Aev06g1261 207 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aev06g1261 207 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aev06g1261 207 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aev06g1261 207 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aev06g1261 207 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aev06g1261 207 Pfam Ribosomal protein S10p/S20e 24 116 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1261 Aev-Chr6 8393081 8395774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1261 1 119 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 89.076 6.86e-74 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1261 K02969 - cpap:110823078 233.802