Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1248 ATGTACGGAAGTCAATGGGAAGGGATCATGAGCAACCTAGTGAAGGTTGTTGAATCAGAACAAATGATGAGATTTGATCCCTGCAACATCATTGTGAGCCATAATGAGGATGTTCCTTCTAATTGGAGCTTTGATGAGTTTCCCAAGACAAGAACAGAGTCAACTTCTGTGATGTTTCCCTCTGTTGCTGAGTCTTTGTTGTCTAGCAGTAGTGCAGAGAGTCATTCTTCTTCAGAGAAATACAGTGATGAATTCCCTTCCTCTTATAATTCTTCTGAGAAGCACACTAGTGATGATCATATTCATCATGACCCTGCAGCAGCCACTATGTCATTCTCTGATCAATTTCCACAAGAGCATCATAACTTACTGAGGGTTGATGCTGTTATAGATCAGAAGCCCCTTGACATTTCCTTTCAGAGAAACCAGATGGTATCCTTCACAATCACAAAGGCAGAAAAGCAGTGTCGTCGTGGTGTAGCTTGTTGTGGGGTAAGTACTACAAGATGTAGCAACTCTGGTAGGAGAGGTGCAGCAGCTAGTAAAAGAAGAATAAGATGGACCAAAGATCTTCATGACTCATTTATGATCATTGTTAATCGCCTAGGTGGGCCAGATAAGGCAAAGCCTAAGGCTATACTAGAGATGATGAAATCCAATTTGCTTTCCATTTCTCATATTAAAAGTCATTTGCAGAAATGTAGGACTACAATATACCAGCACAAAGCTTTGCATGGTGAACAACAGAAGAAGCAGAAGCAGAAACGTGTGGAGAGAGAAGAAATGGAGGATTTGAAGAAGAGAAAGCTGGATGAACCAGGAAGCGGTGATTCAGCTTCAAAGGAAGAGCTTCGTGTCCTCATCGAACCCCTCGCTAAACCCCAGCTTGTCGACCTTCTCGCTAAACTAGGGTCCCAATATCCTTCGATTGCAGAAGAAATAAAAAGTATTGCGAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCTCTTCAGAAACCTTGCGTGCTGCATTTGAAGAGCATGGAGAAATTGAGGAAGGGGCTGTAATCTATGATAAACTAACAGGAAAATCCCGTGGCTATGGTTTTATCACTTACAAGCACATGGAATCAACTCAGCGTGCATTGAGAGCACCTAGCAAGTTAATTGATGGAAGATTGGCAGTTTGTAATCTGGCTTGCGAGGGCCTTAGTGGATCAAGTAGTGCTCCTGATCTTGCACAGAGGAAGCTTTACATAGGAAGCTTATCGCCAGAAGTCACAAGTGAAATGCTGCTTAACTATTTTTCAAGTTATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTTGGCTTTGTTACATACAAGTCAGCAGAATCTGCAAAGAAGGCCATTGATGACCCAGAGAAGAATCTCGGGGAGAGGACTATAATGGTAAAATATGCCGATTCACACAAGAGTAAAACAGGCCAACAAGGATTTCATGCAGGAGGAGTAGTTCCAATGGCAGCATTACCTATGGCCCCAGGATATGTGCAACCTGGAAAATCTCATATTGGTGCCGGTCCTACAGGTTACCCTTACCCTCAAACTCTAGCACAATATCCTGCATCTTCTTATCCAAGCCCTCCCACTGCACCATCTCCTTATCCTACACAAGGGCAGGTTCCTTATCCTCCTTTTTCTTCGAAGAAAGATCAATTTGGAGTACCCCCAACTCAGCCTTTGGGAATGAATAACTACCCTTACTACTATCCCAAGCAATGA 1794 0.4309 MYGSQWEGIMSNLVKVVESEQMMRFDPCNIIVSHNEDVPSNWSFDEFPKTRTESTSVMFPSVAESLLSSSSAESHSSSEKYSDEFPSSYNSSEKHTSDDHIHHDPAAATMSFSDQFPQEHHNLLRVDAVIDQKPLDISFQRNQMVSFTITKAEKQCRRGVACCGVSTTRCSNSGRRGAAASKRRIRWTKDLHDSFMIIVNRLGGPDKAKPKAILEMMKSNLLSISHIKSHLQKCRTTIYQHKALHGEQQKKQKQKRVEREEMEDLKKRKLDEPGSGDSASKEELRVLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTSSETLRAAFEEHGEIEEGAVIYDKLTGKSRGYGFITYKHMESTQRALRAPSKLIDGRLAVCNLACEGLSGSSSAPDLAQRKLYIGSLSPEVTSEMLLNYFSSYGEIEEGSVAYDKDTNESRGFGFVTYKSAESAKKAIDDPEKNLGERTIMVKYADSHKSKTGQQGFHAGGVVPMAALPMAPGYVQPGKSHIGAGPTGYPYPQTLAQYPASSYPSPPTAPSPYPTQGQVPYPPFSSKKDQFGVPPTQPLGMNNYPYYYPKQ* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1248 597 MobiDBLite consensus disorder prediction 73 102 - -
Aev06g1248 597 MobiDBLite consensus disorder prediction 242 281 - -
Aev06g1248 597 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 277 597 - -
Aev06g1248 597 MobiDBLite consensus disorder prediction 73 92 - -
Aev06g1248 597 MobiDBLite consensus disorder prediction 244 281 - -
Aev06g1248 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 393 IPR000504 GO:0003723
Aev06g1248 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 418 486 IPR000504 GO:0003723
Aev06g1248 597 MobiDBLite consensus disorder prediction 544 584 - -
Aev06g1248 597 Coils Coil 248 268 - -
Aev06g1248 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 416 493 IPR000504 GO:0003723
Aev06g1248 597 MobiDBLite consensus disorder prediction 549 565 - -
Aev06g1248 597 CDD RRM_RBM24_RBM38_like 325 400 - -
Aev06g1248 597 SUPERFAMILY RNA-binding domain, RBD 412 507 IPR035979 GO:0003676
Aev06g1248 597 SMART rrm1_1 326 398 IPR000504 GO:0003723
Aev06g1248 597 SMART rrm1_1 417 489 IPR000504 GO:0003723
Aev06g1248 597 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 182 236 IPR006447 GO:0003677
Aev06g1248 597 Gene3D - 240 405 IPR012677 -
Aev06g1248 597 SUPERFAMILY RNA-binding domain, RBD 318 403 IPR035979 GO:0003676
Aev06g1248 597 Gene3D - 181 239 - -
Aev06g1248 597 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 277 597 - -
Aev06g1248 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 425 IPR000504 GO:0003723
Aev06g1248 597 Gene3D - 406 508 IPR012677 -
Aev06g1248 597 SUPERFAMILY Homeodomain-like 180 236 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1248 Aev-Chr6 8312356 8319086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1248 408 501 C2H2 Transcription Factor Family AT2G19380 38.298 3.65e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aev06g1248 RRM_1 5.5e-16 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1248 K12741 - gmx:100776344 524.242