Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1241 ATGGATATCCGCAAGAGAGGAAGACCGGAACACGGATTCAACGTCAACGGAGGATTCAAGAAATCCAAGCAAGAATTCGACTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGCGAGGGGTGCCACTTCTTGCACTATGTTCCTGGTGGCTATAATGCCGTTGCCCAGATGATGAATTTGACACCTGCTGTGCCTCCAGCATCTAGGAACGTCCCAGCCCCACCTCCCGCTCCTAATGGCTCCGCATCTTCTGCTGTCAAAACCCGTGTATGCAACAGGTTTAATACTGCCGAAGGCTGCAAATTCGGGGACAAATGTCATTTCGCCCATGGTGAGTGGGAAATTGGCAAGCCTGTTGCTCTATCCTTTGATGATCATCGTGCCATGGGACCTCCTGCAGCAGCAGGTCGCATGCCTGGTCGAATGGATCCCCCTCCTGGTCCTGCCGCAAGCTTTGGTGCCAATGCTACTGCCAAGATCAGCGTAGAAGCTTCCCTTGCTGGGGCAATCATCGGTAAGGGTGGTGTGAACTCGAAGCAGATATGTCGCCAAACAGGAGCCAAACTCTCAATTCGAGAGCATGAATCGGATCCAAACCTCAGAAACATTGAACTCGAGGGTAGCTTTGAACAAATTAAGGAAGCGAGCAACATGGTAAAGGAATTACTTTTGACCCTGCAGATGTCTGCACCCCCTAAAGCGAACCCCCAAGGTGCTCCTGGAGCCCCTGCTGGTCATTTAAGCAGCAACTACAAGACCAAGCTGTGTGAGAATTTTACCAAAGGATCTTGCACTTTTGGAGACAGATGTCACTTTGCACATGGTGCTGCCGAATTACGTAAATGA 888 0.5034 MDIRKRGRPEHGFNVNGGFKKSKQEFDSLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLTPAVPPASRNVPAPPPAPNGSASSAVKTRVCNRFNTAEGCKFGDKCHFAHGEWEIGKPVALSFDDHRAMGPPAAAGRMPGRMDPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKELLLTLQMSAPPKANPQGAPGAPAGHLSSNYKTKLCENFTKGSCTFGDRCHFAHGAAELRK* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1241 295 Coils Coil 290 295 - -
Aev06g1241 295 SUPERFAMILY CCCH zinc finger 263 294 IPR036855 GO:0046872
Aev06g1241 295 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Aev06g1241 295 Gene3D - 263 295 - -
Aev06g1241 295 Gene3D - 94 131 - -
Aev06g1241 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 289 IPR000571 GO:0046872
Aev06g1241 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Aev06g1241 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 295 - -
Aev06g1241 295 SUPERFAMILY CCCH zinc finger 99 129 IPR036855 GO:0046872
Aev06g1241 295 MobiDBLite consensus disorder prediction 80 99 - -
Aev06g1241 295 CDD KH-I 171 234 - -
Aev06g1241 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Aev06g1241 295 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Aev06g1241 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 241 IPR036612 GO:0003723
Aev06g1241 295 Gene3D K Homology domain, type 1 165 262 IPR036612 GO:0003723
Aev06g1241 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Aev06g1241 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 295 - -
Aev06g1241 295 Pfam KH domain 172 235 IPR004088 GO:0003723
Aev06g1241 295 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Aev06g1241 295 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Aev06g1241 295 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Aev06g1241 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Aev06g1241 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Aev06g1241 295 SMART kh_6 168 238 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1241 Aev-Chr6 8265822 8268495 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev06g1241 KH_1 3.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1241 - - gmx:100803981 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g1241 06 8265822 8268495 Aev06g1241 06 8265822 8268495 ECH