Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1224 ATGGAGCTAGCTCTGAGCTTAGGTGAAGCGCCCAAGTCGTTCTCTCTGCTTGATAACACGACGAAACTACCCAGCAAAGATCCTGTGGGTTTCTGCATAGCACTCGGAGGAGGAACTGCTGCTTTCGCTGCGAAATCCTCATCGGAAGATACAACCAGGGTCGATGAAGAGACAAGGGGTTCCTCAGATCCACCCCTCCAGCTCGACCTTCTCCCTTCAACGCCGGTTCTTCGCTCTCAGCCATCTTCACACCTTCGAATTCCATGGCTCACCGATGCACTGGGTTTGGAGCGCGTGGCGACGGAAGCACCGGGGAGGGCGTTGGACGTGAACTGTTTTCCGGTGGCTCCGACGGCAGCGGAGGACAGAGACGAAGGCGGTGCACTGTCGTCACCAAACAGCGCAGTGTCGTCTTTTCAGATGGAGTTTTGCCTGAGGAACAGCAGCAGTAATGCGGACGCAGCAGGAGGAAGGAACAGGAGATCAGAGCTTGAAGCCGATGGTGCCGACAGAACCAGCGACGACGACGAGAACGGCTCCACGAGGAAGAAACTCAGACTCTCCAAGGAACAATCGGCGTTCCTTGAAGAAAGCTTCAAAGAGCACACCACTCTCAACCCTAAGCAGAAGCTGGCTCTTGCCAAACAGTTAAACCTTCGTCCTCGCCAAGTAGAAGTCTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAGGTGGATTGCGAGTACTTGAAGAGATGCTGTGAGACTCTGACGGAGGAGAATAGGAGGCTGCAGAAGGAGCTTCAAGAACTGAGGGCTCTCAAAACGTCACAACCATTCTACATGCAGCTTCCGGCCACAACTCTCACCATGTGCCCATCTTGTGAAAGAGTCGCTACCAACACCACCGCCAATCATGAGGCTTCTCAAATTCCTTCTTCCGCTTTGTCTCTTGGCAAGCCCAGGCTGTTGCCCTTGCCTAACGGTCAGGCCCATCAGATGCCTTCATGA 1002 0.5399 MELALSLGEAPKSFSLLDNTTKLPSKDPVGFCIALGGGTAAFAAKSSSEDTTRVDEETRGSSDPPLQLDLLPSTPVLRSQPSSHLRIPWLTDALGLERVATEAPGRALDVNCFPVAPTAAEDRDEGGALSSPNSAVSSFQMEFCLRNSSSNADAAGGRNRRSELEADGADRTSDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTANHEASQIPSSALSLGKPRLLPLPNGQAHQMPS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1224 333 CDD homeodomain 182 239 IPR001356 GO:0003677
Aev06g1224 333 ProSiteProfiles 'Homeobox' domain profile. 178 238 IPR001356 GO:0003677
Aev06g1224 333 PANTHER - 5 310 - -
Aev06g1224 333 Pfam HD-ZIP protein N terminus 66 139 IPR006712 GO:0005634
Aev06g1224 333 ProSitePatterns 'Homeobox' domain signature. 213 236 IPR017970 GO:0000981|GO:0006355
Aev06g1224 333 Gene3D - 186 236 - -
Aev06g1224 333 SMART HOX_1 180 242 IPR001356 GO:0003677
Aev06g1224 333 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 310 - -
Aev06g1224 333 SUPERFAMILY Homeodomain-like 174 239 IPR009057 -
Aev06g1224 333 Pfam Homeodomain 182 236 IPR001356 GO:0003677
Aev06g1224 333 Coils Coil 244 274 - -
Aev06g1224 333 Pfam Homeobox associated leucine zipper 238 272 IPR003106 GO:0006355|GO:0043565
Aev06g1224 333 MobiDBLite consensus disorder prediction 301 333 - -
Aev06g1224 333 MobiDBLite consensus disorder prediction 44 66 - -
Aev06g1224 333 MobiDBLite consensus disorder prediction 149 187 - -
Aev06g1224 333 MobiDBLite consensus disorder prediction 158 187 - -
Aev06g1224 333 SMART halz 238 281 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1224 Aev-Chr6 8164857 8166195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1224 65 311 Homeobox Transcription Factor Family AT5G47370 53.360 1.06e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aev06g1224 HD-ZIP_N 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1224 K09338 - gmx:100776113 405.986