Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1218 ATGGCTCCTGGAGGCAGCGTTTTCAAGGAAGTTCTTGAATCTCACCTGATATCTTCAGATTATGAAACAGGCAAGGCTAAATACGAGGCCAAGAGTAGTAATACTACATTTACAAAATCTGGCAATGGGTTGAATGGAAAGAATGGAGTTAGTTCAAAGAATGGAGTGTATGACTTACTTGAGTGCCCGGTTTGCAAGAATTTGATGTACCCTCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCAAATTGCAAGATTGAAGTCCACAATCTTTGCCCAACCTGTCACCATGATCTTGAGAATATAAGGTGTTTGGCACTGGAGAAGGTGGCGGAATCATTGGAACTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATATTCCCATACTACACCAAGCTCAAGCACGAGCAGAATTGCGGATTTCGCCCATACAATTGCCCTTATGCTGGATCTGAGTGCTCTGTGATGGGTGACATCCCAACTCTAGTTGCTCATCTCAAAGAAGATCACAAGGTTGACATGCATGATGGTTGCACCTTCAACCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTGACTGTTTTTAATAGTTTTGGAAGGCATTTTTGCTTGCACTTTGAGGCCTTCCAGCTTGGCACAGCTCCAGTTTACATGGCTTTTCTACGGTTCATGGGTGATGACAATGAAGCCAAGAAATTCAGCTACAGCTTGGAGGTCGGCGCAAATGGTCGCAAACTCATATGGCAAGGGATTCCGAGGAGCATTCGCGACAGTCACAGAAAAGTGCGAGACAGTCAAGATGGTCTCATCATTCAGAGGAACCTAGCTCTTTATTTCTCTGGTGGGGATGGGAAGGAGTTGAAGTTGAGGATCACTGGTCGTATATGGAAAGAAGATTGA 933 0.4405 MAPGGSVFKEVLESHLISSDYETGKAKYEAKSSNTTFTKSGNGLNGKNGVSSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLENIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKEDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGTAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDGKELKLRITGRIWKED* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1218 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 310 - -
Aev06g1218 310 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Aev06g1218 310 CDD RING-HC_SIAHs 60 97 - -
Aev06g1218 310 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Aev06g1218 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 310 - -
Aev06g1218 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 303 IPR008974 GO:0005515
Aev06g1218 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 169 IPR013083 -
Aev06g1218 310 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Aev06g1218 310 SUPERFAMILY RING/U-box 53 104 - -
Aev06g1218 310 CDD Sina 176 304 - -
Aev06g1218 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 114 IPR013083 -
Aev06g1218 310 SUPERFAMILY TRAF domain-like 115 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1218 Aev-Chr6 8120501 8122622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1218 1 310 C3H Transcription Factor Family AT2G41980 80.000 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1218 K04506 - gmx:100813966 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g1218 06 8120501 8122622 Aev06g1218 06 8120501 8122622 ECH