Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1083 ATGGCAGCTACTACTAATCCGTCTCTTTGTTTTGCTTACCCTTCTTCCTCCTCTTCTTCTTCTTCCTCTTCTGCTGCTGCTTTTTCTTCGCAATTGAAGCACAGGCCCGGATTCGTGGGTATAAGGAAAGGATTTGTTTCGTGTTCAGCGGCTCCTTTGTGGTTGGGTGCTACTGTCTTCAGCTCCAAAGCTAGGGCTTCCACGGCCTTGGCTGCGGTGGTTGATAAAGAAGCGGCGTTGGACCAAGGAGAACGTGTGGATGCGGAAAACGAGGGGGCTTCTGACGAGGAACGGCGGTGGAAGCTGCCGAGGGCCACGGAAGTGTACGTATGCAACCTTCCAAGGAGCTTTGACGCCGAACAGCTGCGTCAGATGTTCGAGCCTCATGGAACAATTCTATCCGCTGAGATATGCCGGAATGCTGAGACAGGTGAAAGCAGAGGGTGTGCTTATGTGACAATTGGATCTATTGCCTCAGCAAGAAACGCTGTGGCTGCATTGGATGGAACGGATGTTGGTGGGCGAGAGATGCGGGTAAGATTCTCGATTGAAATGAATCCCAATAGGAGGAATCTTGAGACAATGAACGCCTCACCCAAGAGAGTTATGTACTATGAAGCTCCTTATAAGTTATACGCTGGGAACCTTGCTAGGTCTGTTAGACCTGAAGACTTGAGACATGTTTTCAGTAAATTTGGTAACGTGGCCAGTGTGCGATTGCTGCAAGACCAGAAACAAGGGCGAACCCGGGTTTATGCATTTCTTTCTTTCCTAACAGAGAGAGAACGCGATGCTGCCTTGACCCTCAATGGATCAGAATTGTGTGGTCGTACACTAGTGGTTAGAGAGGGTGTAGACAAGGGTGAAAATTAA 873 0.4926 MAATTNPSLCFAYPSSSSSSSSSSAAAFSSQLKHRPGFVGIRKGFVSCSAAPLWLGATVFSSKARASTALAAVVDKEAALDQGERVDAENEGASDEERRWKLPRATEVYVCNLPRSFDAEQLRQMFEPHGTILSAEICRNAETGESRGCAYVTIGSIASARNAVAALDGTDVGGREMRVRFSIEMNPNRRNLETMNASPKRVMYYEAPYKLYAGNLARSVRPEDLRHVFSKFGNVASVRLLQDQKQGRTRVYAFLSFLTERERDAALTLNGSELCGRTLVVREGVDKGEN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1083 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Aev06g1083 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Aev06g1083 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Aev06g1083 290 Gene3D - 190 282 IPR012677 -
Aev06g1083 290 SUPERFAMILY RNA-binding domain, RBD 104 193 IPR035979 GO:0003676
Aev06g1083 290 SUPERFAMILY RNA-binding domain, RBD 208 288 IPR035979 GO:0003676
Aev06g1083 290 PANTHER OS02G0815200 PROTEIN 12 288 - -
Aev06g1083 290 SMART rrm1_1 107 180 IPR000504 GO:0003723
Aev06g1083 290 SMART rrm1_1 210 282 IPR000504 GO:0003723
Aev06g1083 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Aev06g1083 290 Gene3D - 61 189 IPR012677 -
Aev06g1083 290 CDD RRM_SF 211 282 - -
Aev06g1083 290 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 12 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1083 Aev-Chr6 7225126 7226420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1083 104 289 Eukaryotic Initiation Factors Gene Family AT3G16380 28.877 2.13e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1083 - - adu:107486682 406.371