Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev06g1083 | ATGGCAGCTACTACTAATCCGTCTCTTTGTTTTGCTTACCCTTCTTCCTCCTCTTCTTCTTCTTCCTCTTCTGCTGCTGCTTTTTCTTCGCAATTGAAGCACAGGCCCGGATTCGTGGGTATAAGGAAAGGATTTGTTTCGTGTTCAGCGGCTCCTTTGTGGTTGGGTGCTACTGTCTTCAGCTCCAAAGCTAGGGCTTCCACGGCCTTGGCTGCGGTGGTTGATAAAGAAGCGGCGTTGGACCAAGGAGAACGTGTGGATGCGGAAAACGAGGGGGCTTCTGACGAGGAACGGCGGTGGAAGCTGCCGAGGGCCACGGAAGTGTACGTATGCAACCTTCCAAGGAGCTTTGACGCCGAACAGCTGCGTCAGATGTTCGAGCCTCATGGAACAATTCTATCCGCTGAGATATGCCGGAATGCTGAGACAGGTGAAAGCAGAGGGTGTGCTTATGTGACAATTGGATCTATTGCCTCAGCAAGAAACGCTGTGGCTGCATTGGATGGAACGGATGTTGGTGGGCGAGAGATGCGGGTAAGATTCTCGATTGAAATGAATCCCAATAGGAGGAATCTTGAGACAATGAACGCCTCACCCAAGAGAGTTATGTACTATGAAGCTCCTTATAAGTTATACGCTGGGAACCTTGCTAGGTCTGTTAGACCTGAAGACTTGAGACATGTTTTCAGTAAATTTGGTAACGTGGCCAGTGTGCGATTGCTGCAAGACCAGAAACAAGGGCGAACCCGGGTTTATGCATTTCTTTCTTTCCTAACAGAGAGAGAACGCGATGCTGCCTTGACCCTCAATGGATCAGAATTGTGTGGTCGTACACTAGTGGTTAGAGAGGGTGTAGACAAGGGTGAAAATTAA | 873 | 0.4926 | MAATTNPSLCFAYPSSSSSSSSSSAAAFSSQLKHRPGFVGIRKGFVSCSAAPLWLGATVFSSKARASTALAAVVDKEAALDQGERVDAENEGASDEERRWKLPRATEVYVCNLPRSFDAEQLRQMFEPHGTILSAEICRNAETGESRGCAYVTIGSIASARNAVAALDGTDVGGREMRVRFSIEMNPNRRNLETMNASPKRVMYYEAPYKLYAGNLARSVRPEDLRHVFSKFGNVASVRLLQDQKQGRTRVYAFLSFLTERERDAALTLNGSELCGRTLVVREGVDKGEN* | 291 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev06g1083 | 290 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 211 | 279 | IPR000504 | GO:0003723 | |
Aev06g1083 | 290 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 178 | IPR000504 | GO:0003723 | |
Aev06g1083 | 290 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 184 | IPR000504 | GO:0003723 | |
Aev06g1083 | 290 | Gene3D | - | 190 | 282 | IPR012677 | - | |
Aev06g1083 | 290 | SUPERFAMILY | RNA-binding domain, RBD | 104 | 193 | IPR035979 | GO:0003676 | |
Aev06g1083 | 290 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 288 | IPR035979 | GO:0003676 | |
Aev06g1083 | 290 | PANTHER | OS02G0815200 PROTEIN | 12 | 288 | - | - | |
Aev06g1083 | 290 | SMART | rrm1_1 | 107 | 180 | IPR000504 | GO:0003723 | |
Aev06g1083 | 290 | SMART | rrm1_1 | 210 | 282 | IPR000504 | GO:0003723 | |
Aev06g1083 | 290 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 209 | 286 | IPR000504 | GO:0003723 | |
Aev06g1083 | 290 | Gene3D | - | 61 | 189 | IPR012677 | - | |
Aev06g1083 | 290 | CDD | RRM_SF | 211 | 282 | - | - | |
Aev06g1083 | 290 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 12 | 288 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev06g1083 | Aev-Chr6 | 7225126 | 7226420 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev06g1083 | 104 | 289 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 28.877 | 2.13e-15 | 74.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev06g1083 | - | - | adu:107486682 | 406.371 |