Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1075 ATGTCGGAAGGTGCAGAGATCAATGAGCGTGTGGACCTTGATGAGGAGAATTATATGGAAGAGATGGATGATGATGTTGAAGAGCAAGTAAATGACGATGGAGCAAATGGTGGTGATGATGGGAATGCTAGATGTAGTGTTGAAGAGCCTGAATATGAAGCCTCAGCTGCTGAGGCTGGTGCAAAAGATCAATTAGCTGAGGCAGAAAGAAGTGGCAAGGCTGCTGAATTTGTAGAAGATGAGCAGAAACCACCTTTAGTAAATGAACAAGAGAAGGAGAAGCATGATGAACTTCTTGCCCTGCCTCCTCATGATTCTGAAGTCTTCATTGGTGGGCTTCCTAGGGATTCGTGCGAAGATGATTTGAGGGAATTGTGTGAGCCAATGGGAGACATTCTTGAGGTGCGACTAGTGAAAGACAAGGACACGGGTGGAAACAAGGGTTATGCATTTGTGGCTTTTAAAACAAAGGAGTTGGCGCAAAAGGCCATTGAAGAGATACACAACAAGGAGTTTAAGGGCAAAACCTTAAGATGTTCACTGTCTGAAACAAAACACAGATTGTTCATTGGTAATGTTCCAAAGACCTGGGCTGAGGATGAGTTTAGGAAAGCCGTTGAGGGTGTTGGTCCAGGAGTTGAAAACATTGAGTTCATAAAGGACCCTCAAAATCCAAGCAGGAATCGTGGGTTTGCTTTTGTTATGTATTACAATAATGCATGTGCTGATTATTCGCGGCAAAAGATGTCAAGTGCGAGTTTTAAGCTGGATGGCAATACCCCAACCGTTACGTGGGCTGATCCAAAGAATTCACCTGACCATGCTGCTTCTTCACAGGTTAAAGCGCTATATGTTAGAAACATACCCGAGAATGTAACTACTGAACAACTGAAGGAACTATTCTGTCGTCATGGAGAAGTGGCAAAAGTGGTCATGCCACCCGGCAAAGCCAATGGGAAACGCGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTCAAAGATACAGAGAAATATGAAATTGATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAATCCGAGAAAAAACCTAATGGAGCTTATGCCTACAACCCTGGACTTCATCCAAGCCATCTTCCACATCATGCATATGGTGTCTACTCTGGAAACCTTTATGGCTCTTTAGGTGCTGGATATGGTGTTGTTGCCACTGGTTATCAGCAGCCAATGATTTATGGTAGGGGTCCAATGCCGGCAGGAATGCAGATGGTTCCAATGGTATTACCAGATGGTCAAATTGGCTATGTCCTTCAACAGCCTGGCGTACAGGTGGCACCTCCTCGACCCCAGAGAGTTGATTGGAACGACGGTCCACCAAGGCAAGCACGAGGTGATGGCAGCGAAGAAGGCAATCGCAGTAGAAGGTACCGACCCTATTAG 1440 0.4528 MSEGAEINERVDLDEENYMEEMDDDVEEQVNDDGANGGDDGNARCSVEEPEYEASAAEAGAKDQLAEAERSGKAAEFVEDEQKPPLVNEQEKEKHDELLALPPHDSEVFIGGLPRDSCEDDLRELCEPMGDILEVRLVKDKDTGGNKGYAFVAFKTKELAQKAIEEIHNKEFKGKTLRCSLSETKHRLFIGNVPKTWAEDEFRKAVEGVGPGVENIEFIKDPQNPSRNRGFAFVMYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKNSPDHAASSQVKALYVRNIPENVTTEQLKELFCRHGEVAKVVMPPGKANGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQSEKKPNGAYAYNPGLHPSHLPHHAYGVYSGNLYGSLGAGYGVVATGYQQPMIYGRGPMPAGMQMVPMVLPDGQIGYVLQQPGVQVAPPRPQRVDWNDGPPRQARGDGSEEGNRSRRYRPY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1075 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Aev06g1075 479 Gene3D - 187 267 IPR012677 -
Aev06g1075 479 Gene3D - 7 186 IPR012677 -
Aev06g1075 479 SUPERFAMILY RNA-binding domain, RBD 103 271 IPR035979 GO:0003676
Aev06g1075 479 MobiDBLite consensus disorder prediction 63 93 - -
Aev06g1075 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Aev06g1075 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Aev06g1075 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Aev06g1075 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 477 - -
Aev06g1075 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Aev06g1075 479 CDD RRM3_hnRNPR_like 280 358 - -
Aev06g1075 479 PANTHER GEO13361P1-RELATED 2 477 - -
Aev06g1075 479 MobiDBLite consensus disorder prediction 444 479 - -
Aev06g1075 479 MobiDBLite consensus disorder prediction 462 479 - -
Aev06g1075 479 CDD RRM_SF 108 180 - -
Aev06g1075 479 SUPERFAMILY RNA-binding domain, RBD 274 369 IPR035979 GO:0003676
Aev06g1075 479 Gene3D - 269 373 IPR012677 -
Aev06g1075 479 SMART rrm1_1 282 354 IPR000504 GO:0003723
Aev06g1075 479 SMART rrm1_1 107 180 IPR000504 GO:0003723
Aev06g1075 479 SMART rrm1_1 187 264 IPR000504 GO:0003723
Aev06g1075 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Aev06g1075 479 MobiDBLite consensus disorder prediction 13 34 - -
Aev06g1075 479 MobiDBLite consensus disorder prediction 1 93 - -
Aev06g1075 479 SMART rrm2_1 107 180 IPR003954 GO:0003676
Aev06g1075 479 SMART rrm2_1 282 354 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1075 Aev-Chr6 7190844 7193392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1075 105 391 Eukaryotic Initiation Factors Gene Family AT4G34110 24.232 1.29e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1075 K13161 - gmx:100790907 781.556