Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1057 ATGAATAAGGAGCAAATATCATCAAAGAAACTTGGTGGTAATTTGTGGTGGCCTGAGTGCATGCTGGCTGTGACGGAAACAATGATGGTGCTAGATCTTTTTACTTCTGGTCCTACTTCAGAAGCCATTTCTCAAATTGTAGACACCATTGGTGAGTTTGTAATTTATGCTGGAGATGTCCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCAGCTTACTTGGAAAGAGTTGTGCCCATCTTAAAAGAATTGAGGAAAGAAAAAGTCAGTGATTCTGAGACATTCAATCATGCCATTGAGGTTCTGAACCGTGAAGTAAAAGATGCAAAGCAACTGGTTCATGAATGCAGAAAGAAGAGCAAGGTATATCTCCTAATGAACTGCCGATCCATTGTTAAGCGTTTGCAAAACCATTCAAGTGAGATCAGCAAGGCAATTGGTCTTCTTCCTTTGGCCACAAGCGGTCTTTCAAATGGAATCATTGAAGATATTGTAAAGCTATGTGATAACATGCAGGCAGCTGAGTTTAAGGCAGCCATAGCAGAAGAAGAGATCTTAGAGAAAATCGAGTCAGGGATACATGGAAAGAATGTTGATCGCTCCTATGCAAATAATTTGATGATTCTCATTGCCGAGGCTGTTGGGATTACAAATGAGAAGTCAACAATGAAGAAGGAAATTGAAGAGTTCAAGAGTGAAATCGAAAATGCCCGGCTAAGGAAGGACCTGGCTGAAGCCATACAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGTAGCCTCATCACCTAGGGAAAAGGAACAAAAGTACTTTGCCAAGCGCAACTCTTTGGGTACTCAACCCTTGGATCCTTTAGGGTCTTTTTATTGCCCAATTACGCGAGATGTTATGGTTGACCCTGTAGAAACTTCATCTGGGCAAACATTTGAGAGAAGTGCAATAGAGAAATGGTTTGCAGATGGAAACGATTTGTGCCCTCTGACCATGACTCCTTTAGACACATCAATTTTGAGACCCAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATACAATGATTACCATTGCTTCAAACAGAGAAAAAATCCAATCAGGAGATGATGAGGAAGTACTGCATTGTCTGCAAACTCTTCAACATTTATGTGAACAAAGGGACCAGCACAGAGAATGGGTGATACTGGAGAACTACATACCAGTGTTAATCCAAATTCTTAATGCTAGAAACCGTGATGTCAGGAATAATGCCCTTGTCATCCTTTGCATGCTGGTAAAGGATAGTGAAGATGCTAAGGAAAGAATTGCGAAGGTTGATAATGCAATTGAGACTATTGTCCATTCTCTTGGACGCCGTTTGGGGGAAAGGAAGTTGGCAGTGGCATTACTGCTGGAACTATCTGAATACGATTTGTTAAGAGAATACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACAATGTCTAGCAGTGATGACAATCAATCTGCCAGAGATGCAACAGAGCTGCTGGAAAAGCTTTCGTACTCTGACCACAATGTTATACAGATGGCAAAGGCAAATTATTTCAAGCACTTATTGCTGCGTCTCTCCACAGGACCGGATGATGTGAAGATGATTATGGCCAAAACTCTAGCAGAAATGGAGTTAACTGACCATAATAAGGAGTCATTGTTTGAGAGTGGTGTACTTGCTCCTCTTCTTCAGTTGGTCTCACATAATGATGTTCAGGTGAAAATAGTGGCCCTTAAAGCTCTTAGGAATCTGTCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAAGGTGCAACACGTCCATTACTTGACATTCTTTTCCAGAACAGCATTCCATCCTCAAGTTTGTGGGAACATGTTGCACCAATGATTATGCAGCTTGCTGCATCAACAGTCTCTCAAGATGCCCAGATACCAGTTTCACTACTAGAACATGATCAGGATGTTTTTAACCTTTTCTCTCTAACTAGCTACACTCTGCCTGATGTGCGGGAATACACTATTCAGACTTTTTATGTCTTGTGCCAGTCGCCATCAGCTTCATATATTAGGACCAAATTAAGAGAGTGTCCAGCTGTTCATGTATTGGTTAAGTTGTTAGAGAATGAAAACCTAAAACTACGAGCAAGTGCAGTAAAGCTTCTTTCCTGCTTAGTAGAAGGTTGTGATGAAGCTATCATACAGGAGAATGTGAATCAGAAGTGCATTGAGACTTTACTTAAAATCCTGAAATCGTCATCTGATGAAGAGGAAGTTGTTTCTGCTATGGGAATAATATGTTATCTGCCAGAAATTGACCAGATTACTCAATGGCTTTTGGATGCTGGTGCACTGCCAATCATTTATGATCACATCCAAGAAGGGAAGAACAAAGATCTTCAAAAGAGTAAGTTGGTAGAGAATTCTGTTGGTGCCTTACATCGTTTCACAGTCCAAACAAACTTGGAATGGCAAAAGAGAACAGCAGAAACCGGGATTATAGCTGTTCTAGTACAGTTGCTACAAAGTGGAACGGCGATAACAAAACAGCGTGCAGCATTGTCTCTTAATCAATTTTCTAAAAGTTCAAATGGGCTGAGCAGGCCATTGCCGAAGCGCAAGGGACTTTGGTGCTTCTCAGGCCCAGCAGCGAAAGACGGATGCTTAGTTCATGGGGGACTATGCACTGTCAAATTATCATTCTGCCTTTTGGAGGCTGACGCAGTGAGACCACTAACAAACATTCTTGGGGAATCTGATCCTGGAGTTTGTGAGGCTGCTTTAGATGCTCTGTTAACTTTAATTGAAGCTGAAAAATTACAGTGTGGTAGTAAAGTTCTTGCAGAAGCAAATGCCATACCACTAATGATCAGATTTCTCGGTTCCCCTTCTCCTGGATTGCAGGAAAAATCTCTGCGTGCTTTAGAAAGGATCTTTCGGCTACTGGAGTTCAAACAGATGTATGGAGCCTCGGCTCAAATGCCTCTAGTTGACTTAACTCAGCGGGGTAATGGTAGTGTGAAATCTGTGGCAGCTCAAATATTGGCACATTTGAATGTGCTCCATGATCAATCTTCATATTTCTAA 3099 0.4111 MNKEQISSKKLGGNLWWPECMLAVTETMMVLDLFTSGPTSEAISQIVDTIGEFVIYAGDVLVKKDSFKELAAYLERVVPILKELRKEKVSDSETFNHAIEVLNREVKDAKQLVHECRKKSKVYLLMNCRSIVKRLQNHSSEISKAIGLLPLATSGLSNGIIEDIVKLCDNMQAAEFKAAIAEEEILEKIESGIHGKNVDRSYANNLMILIAEAVGITNEKSTMKKEIEEFKSEIENARLRKDLAEAIQMDQIIALLERADVASSPREKEQKYFAKRNSLGTQPLDPLGSFYCPITRDVMVDPVETSSGQTFERSAIEKWFADGNDLCPLTMTPLDTSILRPNKTLKQSIEEWKDRNTMITIASNREKIQSGDDEEVLHCLQTLQHLCEQRDQHREWVILENYIPVLIQILNARNRDVRNNALVILCMLVKDSEDAKERIAKVDNAIETIVHSLGRRLGERKLAVALLLELSEYDLLREYIGKVQGCILLLVTMSSSDDNQSARDATELLEKLSYSDHNVIQMAKANYFKHLLLRLSTGPDDVKMIMAKTLAEMELTDHNKESLFESGVLAPLLQLVSHNDVQVKIVALKALRNLSSLKKNGLEMIRQGATRPLLDILFQNSIPSSSLWEHVAPMIMQLAASTVSQDAQIPVSLLEHDQDVFNLFSLTSYTLPDVREYTIQTFYVLCQSPSASYIRTKLRECPAVHVLVKLLENENLKLRASAVKLLSCLVEGCDEAIIQENVNQKCIETLLKILKSSSDEEEVVSAMGIICYLPEIDQITQWLLDAGALPIIYDHIQEGKNKDLQKSKLVENSVGALHRFTVQTNLEWQKRTAETGIIAVLVQLLQSGTAITKQRAALSLNQFSKSSNGLSRPLPKRKGLWCFSGPAAKDGCLVHGGLCTVKLSFCLLEADAVRPLTNILGESDPGVCEAALDALLTLIEAEKLQCGSKVLAEANAIPLMIRFLGSPSPGLQEKSLRALERIFRLLEFKQMYGASAQMPLVDLTQRGNGSVKSVAAQILAHLNVLHDQSSYF* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1057 1032 SUPERFAMILY RING/U-box 277 358 - -
Aev06g1057 1032 SUPERFAMILY ARM repeat 366 1022 IPR016024 -
Aev06g1057 1032 Gene3D - 900 1030 IPR011989 -
Aev06g1057 1032 CDD RING-Ubox_PUB 290 331 IPR045210 -
Aev06g1057 1032 Gene3D - 657 880 IPR011989 -
Aev06g1057 1032 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 40 1032 - -
Aev06g1057 1032 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Aev06g1057 1032 Pfam Armadillo/beta-catenin-like repeat 557 596 IPR000225 GO:0005515
Aev06g1057 1032 Gene3D - 39 154 IPR036537 GO:0007166
Aev06g1057 1032 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 567 609 IPR000225 GO:0005515
Aev06g1057 1032 Coils Coil 99 119 - -
Aev06g1057 1032 Gene3D - 459 656 IPR011989 -
Aev06g1057 1032 SMART arm_5 943 984 IPR000225 GO:0005515
Aev06g1057 1032 SMART arm_5 390 430 IPR000225 GO:0005515
Aev06g1057 1032 SMART arm_5 776 822 IPR000225 GO:0005515
Aev06g1057 1032 SMART arm_5 733 772 IPR000225 GO:0005515
Aev06g1057 1032 SMART arm_5 691 731 IPR000225 GO:0005515
Aev06g1057 1032 SMART arm_5 432 472 IPR000225 GO:0005515
Aev06g1057 1032 SMART arm_5 900 940 IPR000225 GO:0005515
Aev06g1057 1032 SMART arm_5 556 596 IPR000225 GO:0005515
Aev06g1057 1032 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 40 1032 - -
Aev06g1057 1032 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Aev06g1057 1032 Pfam U-box domain 290 356 IPR003613 GO:0004842|GO:0016567
Aev06g1057 1032 Gene3D - 365 458 IPR011989 -
Aev06g1057 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 364 IPR013083 -
Aev06g1057 1032 Coils Coil 220 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1057 Aev-Chr6 7082000 7088251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1057 289 1032 U-box Gene Family AT1G76390 29.898 5.78e-65 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1057 - - gmx:100799969 1441.79