Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1055 ATGAGGCCGGTTTTCGTTGGGAACTTCGAGTACGATACCCGTCAGTCAGAGCTTGAACGCTTGTTCTCCAAGTATGGCAAGGTTGAGCGCGTCGACATGAAATCTGGCTTTGCTTTTGTCTATTTTGAGGATGAGCGAGATGCTGAAGATGCAATTCGAGCACTTGACAACTTTCCATTCGGTTATGAGAAGCGGAGGTTGTCTGTGGAGTGGGCCAGGGGTGAACGTGGCCGTCATCGTGATGGATCAAGGGCAAACCAGAGGCCCACAAAAACCCTGTTTGTGATTAATTTTGACCCAATTCGTACCAGAGTTCGTGATATAGAAAGACACTTTGAACCTTATGGGAAAGTTCATCATGTTCGAATTCGTCGCAACTTTGCATTTGTACAGTTTGAAACTCAAGAAGATGCTACTAAAGCCCTTGAGTGTACACATATGAGTAAGATACTGGACAGAGTGGTGTCTGTTGAGTATGCTCTGAGGGATGATGATGAAAAGGGTGACAGATATTACGACAGTCCTAGAAGAGGGGGTTATGGGAGATCACCCAGTCCAGTGTATAGGAGGCGAACAAGTCCTGACTATGGCCGTCCAAGCAGCCCTGTGTATGATAGGTATAATGGACCAGCCTATGACAGACGTAAGAGCCCTCATTATGGTGATGGCAGGCTTAGGAGCCCTGATTATGGTAGGCAAAGGAGTCCTCCTGAATATGGCAGATATCGCAGTCGATCACCAATTAGGAGGTCAAGGACTTAA 762 0.4685 MRPVFVGNFEYDTRQSELERLFSKYGKVERVDMKSGFAFVYFEDERDAEDAIRALDNFPFGYEKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVHHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKGDRYYDSPRRGGYGRSPSPVYRRRTSPDYGRPSSPVYDRYNGPAYDRRKSPHYGDGRLRSPDYGRQRSPPEYGRYRSRSPIRRSRT* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1055 253 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 4 221 IPR029537 GO:0000398|GO:0005681
Aev06g1055 253 SMART rrm1_1 92 158 IPR000504 GO:0003723
Aev06g1055 253 SMART rrm1_1 3 70 IPR000504 GO:0003723
Aev06g1055 253 Gene3D - 1 84 IPR012677 -
Aev06g1055 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Aev06g1055 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Aev06g1055 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Aev06g1055 253 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 221 - -
Aev06g1055 253 SUPERFAMILY RNA-binding domain, RBD 2 165 IPR035979 GO:0003676
Aev06g1055 253 Gene3D - 85 171 IPR012677 -
Aev06g1055 253 MobiDBLite consensus disorder prediction 209 245 - -
Aev06g1055 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Aev06g1055 253 MobiDBLite consensus disorder prediction 166 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1055 Aev-Chr6 7077267 7079312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1055 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 24.731 6.49e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1055 K12893 - mnt:21406229 423.705