Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1037 ATGGAAAGTTTTTCCTTCTTCTTCGTGGCAATGGAATTGGAACCCGAAGCTCGACGGAAAGTCGAGGAGATGGTGATGGACTTACTCAAGCAATCCAACATAGAAGAAACTACCGAGTTCAGCATCCGAGTCGCCGCCTCCGAGCGACTCGGCATCGATCTCTCCCACCCCTTCCGCAAGCAGCTTGTCAGAAACGTCGTCGAGTCTTATCTCCTCTCCGTCGCCGCCGAAGAACCCGCCACCGTAGAGAAACCGCCGCGGGAACCAGCCGCTCCGGAGGAGCCAACCAGAGAGGAGACAGTGCAGTTGGTGAAGCCGAAGAGGGAGTTTAAGGATGACTCTGACCGCGTCATATGCCAGCTATCAAGCAAGAGGAATGTGATGGTTAAGGAGTTCAAAGGAACAACATTGGTATCGATTAGGGAGTTTTATCAAAAAGATGGAAAACAGGTTCCCACTTCAAAAGGGATAAGTTTATCTGCTGAACAGTGGTCAACCTTCAAGAAGAGTGTGCCTGCTATAGAGGAAGCTATCGCAAAGATGGAAGGGAAGATTAAGTCTGAGCTTCGTGGTAAGCAAAGTATGGAGGTCTCGAATCTAGCTGTTGATGTTGCTCCTCTTGAGCCTGTCCCTATTGAGATCAGCCGTTTTGATGGGAAGAATTATAAGTTCTGGACTAGGCAGATGGAACTATTTTTGAAACAGTTAAAGATGGTTGATGACAGATCAATCATTGAGCAAATCCAAGAATTTAATAGCATCACAGATTCCCTTGTCGCTGCAGGAATGTTTATTGACGAAAACTTTCATGTCAGTGTCATCATTTCAAAGCTTCCACTATCCTGGAAGGATATTTGCATCAAGTTAATGCGGGAGGAGCATCTTCCTTTGTGGAAGTTATTGGAGCGTATAAGGATAGAAGAAGAATTTCGCAGAGGAACAAGACGACAAGTTGGTGAACCTTCTGGTAGTATAGGATTCAACCAGGGAAACAAAGGTGGACCGAGAGAGCTGCCAGGTATGCATAGGAACAGGTCAGAAGGGAATGGCAGGAGCATATCATGTTATATTTGTGGGAAGAAGGGGCATCTTTCTAAACACTGCTGGAGAAGATATGACAGGCAAACTAATGAAAGGAAACCAGAAGATGCATCTATACATGCAGAAGTTAATATGGTAGGGGGTTGTTAA 1191 0.4584 MESFSFFFVAMELEPEARRKVEEMVMDLLKQSNIEETTEFSIRVAASERLGIDLSHPFRKQLVRNVVESYLLSVAAEEPATVEKPPREPAAPEEPTREETVQLVKPKREFKDDSDRVICQLSSKRNVMVKEFKGTTLVSIREFYQKDGKQVPTSKGISLSAEQWSTFKKSVPAIEEAIAKMEGKIKSELRGKQSMEVSNLAVDVAPLEPVPIEISRFDGKNYKFWTRQMELFLKQLKMVDDRSIIEQIQEFNSITDSLVAAGMFIDENFHVSVIISKLPLSWKDICIKLMREEHLPLWKLLERIRIEEEFRRGTRRQVGEPSGSIGFNQGNKGGPRELPGMHRNRSEGNGRSISCYICGKKGHLSKHCWRRYDRQTNERKPEDASIHAEVNMVGGC* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1037 396 PANTHER PBF68 PROTEIN 14 232 - -
Aev06g1037 396 SUPERFAMILY ssDNA-binding transcriptional regulator domain 118 180 IPR009044 GO:0003677|GO:0006355
Aev06g1037 396 MobiDBLite consensus disorder prediction 78 100 - -
Aev06g1037 396 Pfam DEK C terminal domain 19 71 IPR014876 -
Aev06g1037 396 MobiDBLite consensus disorder prediction 81 100 - -
Aev06g1037 396 ProSiteProfiles Zinc finger CCHC-type profile. 355 368 IPR001878 GO:0003676|GO:0008270
Aev06g1037 396 Gene3D - 306 391 - -
Aev06g1037 396 Gene3D Transcriptional Coactivator Pc4; Chain A 110 187 IPR009044 GO:0003677|GO:0006355
Aev06g1037 396 SUPERFAMILY Retrovirus zinc finger-like domains 341 375 IPR036875 GO:0003676|GO:0008270
Aev06g1037 396 Pfam gag-polypeptide of LTR copia-type 233 312 - -
Aev06g1037 396 MobiDBLite consensus disorder prediction 315 346 - -
Aev06g1037 396 PANTHER PBF68 PROTEIN 237 380 - -
Aev06g1037 396 PANTHER PBF68 PROTEIN 14 232 - -
Aev06g1037 396 PANTHER PBF68 PROTEIN 237 380 - -
Aev06g1037 396 Pfam Transcriptional Coactivator p15 (PC4) 119 169 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1037 Aev-Chr6 6934267 6936959 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Aev06g1037 Retrotran_gag_2 3.1e-07 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1037 - - cam:101512708 280.026