Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1023 ATGGCAGATTCTGAAGAAGTCGCAAAATCTGCCGAAAACCAGCAAACAGAGCAAGTGTGTAGCTTCTTCAGGAAACCAGTTAATAAGAAGAATATAAGGAAACGTACAATTGATAATGATGACGACGATGAGGATTCAAAGAATGAAAGCTCTTTGTTACATACTCAGAAGAAGACTTCGAAATCCGACAATAAGTTGTACTTTTCCACTGGTTCCTCAAAAAGCTCTGCTTCTGCTGAACAGAGTGAAGAACCTGATAAACCTACCTTCCATTTTGAGTCTTCGAAAGAGATTCAAGTTCAACATGATAGCAAAGCTACGGCGATTCTAGAGACGGAGACTGATTTCTCGAGAGATGCTCGTGCCATCCGTGAGAGAGCTCTCAAGCAAGCAGCAGAGAGTTTGAAGGGGAAAGCCCCAAGTTCCGAGGATGAAAAAATGTATAAGGGCATTAATAATTACAAAGATTACAAGGCTGGATTTCGCAGAGAGCAAACAATTGCTAGTGAGAAAGCTGGTGGGGCACATGGTCCTCTCAGGGCTTCGGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGATATCTGTAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGTGATTCTTGTAAATTTATGCATGATCGAGGCGACTACAAGTCTGGATGGCAATTGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGCGACGATGCGGATGAGGAAGGTGCTGCTCATGTGTCTGATGAAGATGATGATGATGATTCATTACCATTTGCATGTTTCATCTGTAGGAAGCCTTTTGTGGATCCTGTCGTAACCAGGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAACAAGAAGTGTTTTGTCTGCAACCAGCCAACTCTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAAATGGCCGAGGATAAATAG 993 0.428 MADSEEVAKSAENQQTEQVCSFFRKPVNKKNIRKRTIDNDDDDEDSKNESSLLHTQKKTSKSDNKLYFSTGSSKSSASAEQSEEPDKPTFHFESSKEIQVQHDSKATAILETETDFSRDARAIRERALKQAAESLKGKAPSSEDEKMYKGINNYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARKMRLAAGDDADEEGAAHVSDEDDDDDSLPFACFICRKPFVDPVVTRCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1023 330 Gene3D - 190 224 - -
Aev06g1023 330 SUPERFAMILY RING/U-box 270 313 - -
Aev06g1023 330 MobiDBLite consensus disorder prediction 62 79 - -
Aev06g1023 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Aev06g1023 330 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Aev06g1023 330 MobiDBLite consensus disorder prediction 1 112 - -
Aev06g1023 330 PANTHER ZINC FINGER PROTEIN 183 9 329 IPR039971 -
Aev06g1023 330 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Aev06g1023 330 MobiDBLite consensus disorder prediction 32 61 - -
Aev06g1023 330 MobiDBLite consensus disorder prediction 8 22 - -
Aev06g1023 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 328 IPR013083 -
Aev06g1023 330 ProSiteProfiles Zinc finger RING-type profile. 271 309 IPR001841 -
Aev06g1023 330 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Aev06g1023 330 Pfam Zinc finger, C3HC4 type (RING finger) 270 312 - -
Aev06g1023 330 SMART ring_2 271 308 IPR001841 -
Aev06g1023 330 CDD RING-HC_RNF113A_B 269 309 - -
Aev06g1023 330 ProSitePatterns Zinc finger RING-type signature. 286 295 IPR017907 -
Aev06g1023 330 MobiDBLite consensus disorder prediction 80 100 - -
Aev06g1023 330 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 9 329 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1023 10 330 C2H2 Transcription Factor Family AT1G01350 70.093 1.63e-169 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev06g1023 zf-C3HC4_3 1.1e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1023 K13127 - gmx:100787434 576.63