Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1004 ATGGATCCAGACGCCACTGACTCTTCCGGTGAAGAATATGAATATGAAGAAAGCGAATGCGTCCCTCATCATCAGGGTGCCCCCAGAGGCGCCAGGAAGATTATCAACGAGATTAGGCTTGGCGTACTGATGAGCAAGAGAGTGCCACTCAAACATAGGCCTAAGCACCAAGAACAACAGCAGCAGAGTGGAAGAAAGGAGGTAACCATGGAAGAAATTGAAGAGGGTGGTGCTAATAACAGGAGAAGAAAGCTTCGTGGGGTTCGGCAAAGGAAGTGGGGGAGATGGGCGGCGGAAATCAGAGACCCTGTGAAGCGAACCAGAGTGTGGTTGGGAACTTTTGACACTGCAGAAGAGGCTGCTATTGTTTATGACAGAGAAGCCATTCGCCTTAGAGGCTCTAGTGCTCAAACAAATTTCCTGAAGCCCCCAGAGAAGACCAAGACCACAGCAAGTGAAGGTTTTGATGATGGTATGGACATTGACACCAAGGTTGCTGCTCTTGATGCTTTCCAAGTTAGTGCCAATGATGATGTCAATTGTAGCTATAATTCAGGTACAGAGTCTCATGACATGCCTTCACCCACCTCTGTTCTCATATTTGAATCTGAGGCTGGGACTAAGGAGATCTTAGCGGAGTGTAGTTCCATTGAGTTTAGGGATGAATCATGTACACAACAACATAGATCCTTTCTAGATTCTTCGTCATCCTTTGATGATTGTTGTTCTGATTTTGAAATTCCGCCTCCAATGTTTCTTGATGAAAGGTGTGTGCCCCTTTTCATCCCTAACGACAGTCTCAGTGATGCTGCCTGTATTATTATTAATGAGGATTTTGAGTCATGTAATTTGGATTTAGACAATTACTTCTTGCAACAATGA 882 0.4501 MDPDATDSSGEEYEYEESECVPHHQGAPRGARKIINEIRLGVLMSKRVPLKHRPKHQEQQQQSGRKEVTMEEIEEGGANNRRRKLRGVRQRKWGRWAAEIRDPVKRTRVWLGTFDTAEEAAIVYDREAIRLRGSSAQTNFLKPPEKTKTTASEGFDDGMDIDTKVAALDAFQVSANDDVNCSYNSGTESHDMPSPTSVLIFESEAGTKEILAECSSIEFRDESCTQQHRSFLDSSSSFDDCCSDFEIPPPMFLDERCVPLFIPNDSLSDAACIIINEDFESCNLDLDNYFLQQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1004 293 SUPERFAMILY DNA-binding domain 84 140 IPR016177 GO:0003677
Aev06g1004 293 MobiDBLite consensus disorder prediction 48 79 - -
Aev06g1004 293 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Aev06g1004 293 MobiDBLite consensus disorder prediction 1 15 - -
Aev06g1004 293 MobiDBLite consensus disorder prediction 54 79 - -
Aev06g1004 293 Gene3D AP2/ERF domain 84 142 IPR036955 GO:0003700|GO:0006355
Aev06g1004 293 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Aev06g1004 293 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Aev06g1004 293 MobiDBLite consensus disorder prediction 1 32 - -
Aev06g1004 293 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 2 290 - -
Aev06g1004 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 290 - -
Aev06g1004 293 CDD AP2 84 140 IPR001471 GO:0003700|GO:0006355
Aev06g1004 293 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Aev06g1004 293 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1004 Aev-Chr6 6745444 6746325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1004 84 290 AP2-EREBP Transcription Factor Family AT2G46310 40.909 9.09e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aev06g1004 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1004 - - adu:107491972 210.305