Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0979 ATGGCGAGGAGAGAGAGAGGGGTGTGTGATTCTGATGGGAGTGCGAGAGCAGCGGAGTTGAAGGAGAAGCTACGCGGATTGGTGGAGGCCATCGTGGACGAGGACGACTTCTCCACGCGCACCGCCGACGACGCTATTGCCACTCTCTCTGCTCTCAGGGAGTTGAAGCGTCGCCGTCCCACTCCGAGGTCTCTTTCCGGCAACAATTTCGAGGAGTTCTCTGTCCCTCCCGAATTCCGATGCCCCATTTCCACCGAGCTCATGACCGATCCTGTTATCTTGGCCACCGGACAGACTTATGATAGGGCATACATCCAGAGGTGGTTGAATGAAGGCCACAGGACATGCCCTCAAACCCAGCAAGTCCTCTCCCACACCATCCTTACTCCTAATTATTTGGTTCGAGACATGATTGTACAGTGGTGTAAAGAGCATGGGATTGAGAAGCCGAAGCCTGTTCAGGATATCAACGAACTAGTTACTGATGCAGACAGAGAACACTTGGATTCGTTGCTTCATAAGCTGTCACAGTCTGTTTCTGATCAGAAAGAAGCTGCGAAAGAGCTTAGGCTGTTAACAAAGCGAATGCCTTCATTTAGGACCCTCTTTGGAGAGTCCAGTAATGTGATTCCACAGTTGCTCGGTCCATTATCACCTGAAACACCTGATGTTCACCCTGATCTCTACGAAGACCTGATTACAACTATTCTAAATCTCTCGATTCAGGATGATAATAAGAAAGCATTTGGAGAGGATCCAAGTGTCATTTCTCAGCTCATTGATGCCCTGAAATCTGGGACCATTCAAACAAGAAGCAATGCTGCGGCTGCCATTTTCACATTGTCGGCTCTCGACACCAACAAGCAAATCATTGGAAAGTCTGGAGCTATCAAACATTTGCTTGACCTTTTGGAGGAGGGACAGCCATTGGCCATGAAAGATGCTGCTTCAGCCATATTCAACCTTTGTCTAGTACACGAGAATAAAGGGAGGACCGTGCGAGAAGGGGCCATCCAAGTTATTCTTAACAAGATGATGGACCACATTCTAGTTGATGAGTTGTTGGCTATATTGGCACTCCTTTCTAGCCATCCCAAGGCTGTGGAAGAAATGGGTGATCTCGGTGCCGTCCCGTTCTTGTTAGGTGTTATAAGGGAGGGCACGTCAGAACGAACCAAGGAAAATTGTGTTGCAATCCTATATACAATCTGTTACAGTGACAGAACAAAGTTGAAGGAAATCAGAGAAGAAGAAAAGGCCAACGGTACACTGTCCAAACTAGCAAAATGTGGGACTTCAAGGGCGAAAAGGAAGGCCAATGGGATTCTTGAGAGGCTCAATCGATCTCCTTGCTTGACACACACTGCATAG 1371 0.4799 MARRERGVCDSDGSARAAELKEKLRGLVEAIVDEDDFSTRTADDAIATLSALRELKRRRPTPRSLSGNNFEEFSVPPEFRCPISTELMTDPVILATGQTYDRAYIQRWLNEGHRTCPQTQQVLSHTILTPNYLVRDMIVQWCKEHGIEKPKPVQDINELVTDADREHLDSLLHKLSQSVSDQKEAAKELRLLTKRMPSFRTLFGESSNVIPQLLGPLSPETPDVHPDLYEDLITTILNLSIQDDNKKAFGEDPSVISQLIDALKSGTIQTRSNAAAAIFTLSALDTNKQIIGKSGAIKHLLDLLEEGQPLAMKDAASAIFNLCLVHENKGRTVREGAIQVILNKMMDHILVDELLAILALLSSHPKAVEEMGDLGAVPFLLGVIREGTSERTKENCVAILYTICYSDRTKLKEIREEEKANGTLSKLAKCGTSRAKRKANGILERLNRSPCLTHTA* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0979 456 PANTHER U BOX DOMAIN-CONTAINING 10 454 - -
Aev06g0979 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 148 IPR013083 -
Aev06g0979 456 Gene3D - 351 450 IPR011989 -
Aev06g0979 456 SMART Ubox_2 78 141 IPR003613 GO:0004842|GO:0016567
Aev06g0979 456 SMART arm_5 364 405 IPR000225 GO:0005515
Aev06g0979 456 SMART arm_5 242 283 IPR000225 GO:0005515
Aev06g0979 456 SMART arm_5 284 324 IPR000225 GO:0005515
Aev06g0979 456 ProSiteProfiles U-box domain profile. 74 148 IPR003613 GO:0004842|GO:0016567
Aev06g0979 456 SUPERFAMILY RING/U-box 63 152 - -
Aev06g0979 456 Pfam U-box domain 75 145 IPR003613 GO:0004842|GO:0016567
Aev06g0979 456 SUPERFAMILY ARM repeat 172 446 IPR016024 -
Aev06g0979 456 Pfam Armadillo/beta-catenin-like repeat 287 323 IPR000225 GO:0005515
Aev06g0979 456 CDD RING-Ubox_PUB 79 121 IPR045210 -
Aev06g0979 456 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 10 454 - -
Aev06g0979 456 Gene3D - 205 350 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0979 Aev-Chr6 6618234 6620290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0979 137 456 U-box Gene Family AT3G07360 58.232 1.67e-122 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0979 - - gmx:100806619 671.774