Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0956 ATGGATTCATCATTCTATAGCTATGATGCTCCATTTTCATTCACATCATCACATAACCACCAATCTCTCCCCTTCAACGAAAATGACTCCCAGGAGATGCTTCTTTATCAAGTCCTGGCACAGGCTGCTACTGCAGACTCTGTTGAAGCAGCAACATCTAATTCAAGGGGAGATACTAACAATAACAATAACAATAATAATAATGATGAAGAGGTGATAATTAGCTCAAAGAGCAGGAGGATGATGGCGGCGGCATCAGAATCACAATCAGAAGAAGTAGTTGCATACAGGGGAGTGAGAAGGAGGCCATGGGGGAAGTACGCAGCAGAGATAAGGGACTCTACGAGGAACGGTGCGAGGGTTTGGTTGGGAACCTTTGACACAGCAGAGGAAGCAGCAATGGCTTATGACCAAGCTGCATTGGCTATGAGAGGCTCCATGGCTGTCTTGAATTTCCCACTGGAGGAGGTTCAGCGCTCACTCCACAACATCATGCAGTGCTGTGGCTTCAAGGAAGGGTCTTCCCCTGTTCTCGAGCTGAAGAAGAAGCACTCCATCAACAGGAAGAGGACCAAATTGTTAGAGAGGCATCCTGATGCTGATGGTGGTGAAGAGGTGGTGGTGTTGGAGGATTTGGGACCAGACTATTTGGAACACCTTCTAACTTTCTCACACCCCGATGCTTGCTACTAG 693 0.4733 MDSSFYSYDAPFSFTSSHNHQSLPFNENDSQEMLLYQVLAQAATADSVEAATSNSRGDTNNNNNNNNNDEEVIISSKSRRMMAAASESQSEEVVAYRGVRRRPWGKYAAEIRDSTRNGARVWLGTFDTAEEAAMAYDQAALAMRGSMAVLNFPLEEVQRSLHNIMQCCGFKEGSSPVLELKKKHSINRKRTKLLERHPDADGGEEVVVLEDLGPDYLEHLLTFSHPDACY* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0956 230 CDD AP2 96 153 IPR001471 GO:0003700|GO:0006355
Aev06g0956 230 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Aev06g0956 230 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Aev06g0956 230 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
Aev06g0956 230 SUPERFAMILY DNA-binding domain 96 154 IPR016177 GO:0003677
Aev06g0956 230 Gene3D AP2/ERF domain 95 155 IPR036955 GO:0003700|GO:0006355
Aev06g0956 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 13 223 - -
Aev06g0956 230 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Aev06g0956 230 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Aev06g0956 230 PANTHER DNA-BINDING DOMAIN 13 223 IPR044808 GO:0003700|GO:0009873
Aev06g0956 230 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0956 Aev-Chr6 6461148 6461840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0956 23 221 AP2-EREBP Transcription Factor Family AT3G23240 48.276 5.61e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aev06g0956 AP2 9.8e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0956 K14516 - gmx:100787732 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g0786 02 6655060 6656736 Aev06g0956 06 6461148 6461840 ECH
Aev06g0956 06 6461148 6461840 Aev06g0956 06 6461148 6461840 ECH
Aev06g0956 06 6461148 6461840 Aev02g0784 02 6623926 6624726 PCT