LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev06g0858	ATGGCAAATCATAGTCACAAGAGAGATTCTTGTCTTTGGTACAATGAAAAAAGACATGGCGTCACATCAAAATCAGAGACGCTCTCATTGGATGACGATGAATTCAATTTTACACCCAAAAGTCGAGCATTTTCTCTTTGTTCCCCTGTTTCTTCGGGTCAAGGCTTGAGGCGTAGGGATTTAGAGAGTGGAAAAGAATATGGCTCGACTCCAAAATCAGTCCCTAGAGACAAAAGAAGAAGCCATGGCTCTGACAAAAAAACTGAAATTCCCATAACTTGTTTGAACTTGAATACTTCACGATTTAGCTTCAGCAAGATTTTCAAACCATGGAAAAAGGGATCGAGTAACAGTAAGAACCAGGTTTCATCATCCTCTCCTTGTTCCAATGATGTAACAACAACCCAAGACATGATAATAAGCTCTCCTCAAGTGCGTAGTAACAATAATGCATACAGATTTAATTCTCCATTCACCACTTTCACTCTCTCTGAATTGAAAAAGGCAACTAATGATTTCAGCAGAGAGAATTTGATTGGAAGAGGTGGATATGCTGAAGTGTTCAAGGGTCGTCTGAGAAATGGGCAACTAGTAGCTGTAAAACGATTGAACAAAGGAATTGAGACGAACACGAGCTCAAACTTTTTATCTGAGCTTAATGCTATTGCATTTATCGATCATCCAAACACGGCAAAACTTATTGGATGTAGTTCATCCGGAGAATTTTGCCTTGTCTTCCAACTTTCTCCACTTGGAAGTTTAGCATCTCTGCTTCATGGTCCTGATAAAGACAAGCTGAATTGGAATCGGAGGTACAAAATAATCTTAGGGATAGCTGATGGTTTGCTTTATCTACATGATCATTGTCATAGCCAACTCATCCATAGAGATATCAAATCTGAAAATGTTCTGCTCACGGAGAACTTTGAGCCAAGGATTTGTGATTTTGGGCTTGCAAAATGGATGCCAGCAAATAATACTCACCAACTCGTCACAAAGTTTGAAGGGACATTTGGGTATTTTGCACCTGAATATTTGATGCACGGCATAGTTAATGAGAAAACAGATGTTTATGCCTTTGGGATCCTACTTCTAGAGCTCATAACAGGGCGCAAGGCTTTGGACTATTTGCAACAGAGCATTCTGCTATGGGCAAAGCCTTGGCTAGATGCAAATAATGTTAAGGAGCTTGTTGATCCTTCTCTTGGCGATAATTATAATCGTGACCAGATGGATCGTGTTGTCTTGACTGCTTCTCTTTGTGTTGAGCATTCTCCTCTTTTACGCCCTCGCATGAATCAGGTTGTGGTGCTCTTAAGAGGTGATGACTTTATAGTGGAATTTGGGAATGGAAGCCCAAGGCGGTACCTGCCTAGAACACACCCTGAACCTGAACCAGAAGAAGAAGAAGATGCCATAGAAATTGAATTCAGTGCTGCTACTGCTACTGCAGTTGAATAA	1461	0.4066	MANHSHKRDSCLWYNEKRHGVTSKSETLSLDDDEFNFTPKSRAFSLCSPVSSGQGLRRRDLESGKEYGSTPKSVPRDKRRSHGSDKKTEIPITCLNLNTSRFSFSKIFKPWKKGSSNSKNQVSSSSPCSNDVTTTQDMIISSPQVRSNNNAYRFNSPFTTFTLSELKKATNDFSRENLIGRGGYAEVFKGRLRNGQLVAVKRLNKGIETNTSSNFLSELNAIAFIDHPNTAKLIGCSSSGEFCLVFQLSPLGSLASLLHGPDKDKLNWNRRYKIILGIADGLLYLHDHCHSQLIHRDIKSENVLLTENFEPRICDFGLAKWMPANNTHQLVTKFEGTFGYFAPEYLMHGIVNEKTDVYAFGILLLELITGRKALDYLQQSILLWAKPWLDANNVKELVDPSLGDNYNRDQMDRVVLTASLCVEHSPLLRPRMNQVVVLLRGDDFIVEFGNGSPRRYLPRTHPEPEPEEEEDAIEIEFSAATATAVE*	487

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aev06g0858	486	MobiDBLite	consensus disorder prediction	48	87	-	-
Aev06g0858	486	MobiDBLite	consensus disorder prediction	58	87	-	-
Aev06g0858	486	ProSiteProfiles	Protein kinase domain profile.	173	445	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aev06g0858	486	Pfam	Protein tyrosine and serine/threonine kinase	176	437	IPR001245	GO:0004672\|GO:0006468
Aev06g0858	486	SMART	serkin_6	173	445	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aev06g0858	486	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	293	305	IPR008271	GO:0004672\|GO:0006468
Aev06g0858	486	PANTHER	OS08G0249100 PROTEIN	82	463	-	-
Aev06g0858	486	ProSitePatterns	Protein kinases ATP-binding region signature.	179	201	IPR017441	GO:0005524
Aev06g0858	486	PANTHER	RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE	82	463	-	-
Aev06g0858	486	Gene3D	Transferase(Phosphotransferase) domain 1	250	444	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev06g0858	Aev-Chr6	5828683	5833438	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev06g0858	161	444	Receptor kinase-like Gene Family	AT1G60800	43.836	4.02e-73	239

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Aev06g0858		PK_Tyr_Ser-Thr	3.1e-42	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev06g0858	-		-	gmx:100781529	466.463

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Aev06g1190	06	7925190	7927283	Aev06g0858	06	5828683	5833438	ECH
Aev02g0601	02	4692026	4696795	Aev06g0858	06	5828683	5833438	ECH
Aev01g2997	01	31597628	31600298	Aev06g0858	06	5828683	5833438	ECH
Aev04g0286	04	1742935	1745219	Aev06g0858	06	5828683	5833438	ECH
Aev06g0858	06	5828683	5833438	Aev06g0858	06	5828683	5833438	ECH

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