Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0802 ATGCCAATGGGTCTTGGCAACGACAACGACGACGATGATGTTGTTCCTGACGGAGACACCACCACCAACAACAGCACCTTCACCTCTTCTGTGTCTTGCTCTATTTGCCTCGAGCTTGTTGCCGACAACGGCGATAGATCCTGGGCTAAGCTTCAATGCGGCCATCAATTCCATCTCGACTGCATTGGCTCGGCATTCAATATAAAAGGGGCAATGCAATGCCCTAATTGTCGGAAGATTGAGAAAGGTCAGTGGCTTTATGGTTCCCGATCATATCCAGAATTAGGCACGGATGATTGGACACATGATGAGGATCTATATGATCTTAGCTACTCTGAAATGTCCTTTGGAGTTCACTGGTGCCCATTTGGTAACTTGACCCGATTTCCTTCGTCTTTCGAAGAAGGAGAATTTCCATCAACTGCATATCATGATATGCTGGGACAACATGCTATATTTGCTGAACATACTGCCGTATCATCTGCTAGTCATCCATGTCCATATATCGCGTACTTTGGGCCTATACATCCCTCCACTTCCAACTCTGGTGGAACTGTTTCAGAAGCTTCTAACTTCAACCATTGGAGTGGTCCGCCTGTACCTGGTGACTTGCCAGCCTCTTATGCATTCCCTGCCTTGGATCTTCATTATCACAGTTGGGAACACCATTCCTCTCACTTTTCTTCTGCCAGCAGCCGTCTAGGTGCTGCTGACCAGCCCTCAGTATCACCTGGTAGTCAAAGGCCGGGAAGGGGTAGTTCAGATGTCCCAAGATCAGGATCTGTCATGCATCCCTTCCTTGTTGGTCACAGTTCTGCTGCTAGAGCTGGGACATCTGTTGCATCTTCAATGATGCCTCCATATCCAGGTAGCAATGCACGAGCACGTGACAGAGTCCAGGCTCTTCAGGCATACTATCAACCTCCGCAACCTCCTAATTCTACTACAATGCGGTCACCGGTTGCTTCTGGCACTCGAAGATCCAGCAGTCATAATGGGTCAGCTCAACTAGCACCAGTGGCCTCACCACCAGACCAAAGCGGTGCCTTCTTATTGATCCCATCAGGCTCATCAGGACGCAACTTTCAGGAAGAAACCCATTTGCCAAGTCGCTTCCAAGCATGGGAAAGAGATCACTTGCCTTCGTTGTCATTGAACCATGTAGATAGAGAATCAAGTTGGAGAGCGTACCACCAGGCTGCCAGTGTGTCGGAACCAGGTTTCAAAATGAGTCGAGGAGGTGCAGCTGGCGGAGCCAAGGGGAAGAAGAAGGGTGTGACCTTCACCATTGACTGCGCAAAGCCAGTGGAGGACAAGATCATGGACATTGCATCTCTCGAGAAGTTCCTTCAAGAGAGGATTAAGGTCGGTGGCAAAGCTGGTGCTCTTGGCGATTCCGTCACCGTTACCCGTGACAAGTCCAAGATCACTGTCACCTCTGACAGTAACTTCTCCAAGCGGTACCTGAAGTATTTGACAAAGAAGTACTTGAAGAAACACAATGTACGTGACTGGCTTAGAGTCATTGCTTCTAACAAAGATAGGACTGTTTATGAATTGAGGTACTTCAACATTGCTGAGAATGAGGGAGAGGAAGAAGATTAA 1605 0.4841 MPMGLGNDNDDDDVVPDGDTTTNNSTFTSSVSCSICLELVADNGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYGSRSYPELGTDDWTHDEDLYDLSYSEMSFGVHWCPFGNLTRFPSSFEEGEFPSTAYHDMLGQHAIFAEHTAVSSASHPCPYIAYFGPIHPSTSNSGGTVSEASNFNHWSGPPVPGDLPASYAFPALDLHYHSWEHHSSHFSSASSRLGAADQPSVSPGSQRPGRGSSDVPRSGSVMHPFLVGHSSAARAGTSVASSMMPPYPGSNARARDRVQALQAYYQPPQPPNSTTMRSPVASGTRRSSSHNGSAQLAPVASPPDQSGAFLLIPSGSSGRNFQEETHLPSRFQAWERDHLPSLSLNHVDRESSWRAYHQAASVSEPGFKMSRGGAAGGAKGKKKGVTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRTVYELRYFNIAENEGEEED* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0802 534 Gene3D - 415 534 IPR038526 -
Aev06g0802 534 ProSiteProfiles Zinc finger RING-type profile. 33 78 IPR001841 -
Aev06g0802 534 MobiDBLite consensus disorder prediction 1 23 - -
Aev06g0802 534 CDD RING-H2 33 78 - -
Aev06g0802 534 PANTHER OS09G0511500 PROTEIN 3 411 IPR044274 GO:0004842
Aev06g0802 534 MobiDBLite consensus disorder prediction 306 341 - -
Aev06g0802 534 PANTHER PROTEIN, PUTATIVE-RELATED 3 411 - -
Aev06g0802 534 MobiDBLite consensus disorder prediction 231 264 - -
Aev06g0802 534 Pfam Ring finger domain 32 78 IPR001841 -
Aev06g0802 534 MobiDBLite consensus disorder prediction 306 346 - -
Aev06g0802 534 SMART ring_2 33 77 IPR001841 -
Aev06g0802 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 86 IPR013083 -
Aev06g0802 534 MobiDBLite consensus disorder prediction 231 254 - -
Aev06g0802 534 SUPERFAMILY RING/U-box 28 80 - -
Aev06g0802 534 Pfam Ribosomal L22e protein family 424 532 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0802 Aev-Chr6 5459743 5467956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0802 410 534 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 88.800 2.78e-64 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0802 - - gmx:100815923 661.373