Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0722 ATGTCTGCATCTGTTGATGAGATCCCAAATGTTGTTAATGGTATTGATGGAGATGACGATGATGACGAGGAGGAAGATGATGATGCTGCTGAAATTGAAAAATTGCAGCGGAAGGAGAAAGGTTTGGGAGAGCGAAGGAGGTGGTTCTTCATCCATTTACGAAAGTCAAGAACAAAATTCGGAGAATCAGGAGCAGAAGAGCGCTTCTTCGATCGTCATCGTCTTCAGGGAATGCAAGTAGTAGCGGAGGTTCTTCAGGTGACAACAATGTCCTCCTCTAGGCCTAGCCAATCATCAAGATCCAGCAACTCAGGAAGATCAAGGCACAGTGCTAGAGTCATTGCTCAGACCACTGTGGATGCAAAGCTCCATGCAACTTTTGAGGAGTCAGGAAGTTCCTTTGACTACTCCAATTCAGTGAGGCTATCTTCTGGCACAGTCAGTGGAGACCAACAACCAAGGTCTGATAGAGTCACAACAGCTTATCTGCATCAGATACAGAAAGGAAAGTTCATCCAACCTTTTGGGTGTTTGCTAGCTTTGGATGAGAAAACTTGCAGGGTCATTGCATACAGTGAGAATGCACCTGAAATGCTCACTATGGTTAGCCATGCTGTCCCAAGTGTTGGTGACCACCCTGCTCTCGGCATAGGCACCGACATAAGGACTATTTTCACTGCCCCAAGTGCTGCTGCTTTGCAGAAAGCACTGGGAGTTCCAGAGGTTTCTCTTCTTAACCCCATCCTAGTTCATTGCAAGACTTCCGGGAAGCCCTTTTATGCGATAATCCATCGTGTCACCGGCAGCTTGATCATTGATTTTGAGCCTGTCAAGCCTAATGAAGTCCCCATGACTGCAGCAGGTGCCCTGCAGTCTTACAAGCTTGCGGCAAAAGCAATAACTCGGTTGCAATCTTTGCCGAGTGGGAGCATGGAGACTCTTTGTGACACCATGATTCAAGAAGTTTCTGAACTTACGGGCTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAGGTCAAAAAGCCAGGCCTAGAGCCGTATCTGGGCTTGCACTATCCGGCCACCGATATACCTCAGGCTACTCGCTTCTTATTTATGAAGAACAAGGTCCGCATGATAGTTGATTGCCGTGCAAAGCATGTGAAGGTGCTTCAAGACCCCAAAATTCCCTTTGATCTGACCTTGTGTGGTTCCACCTTGAGGGCTGCTCATAGTTGCCATTTGCAATACATGGAAAACATGAACTCAATTGCTTCCCTGGTTATGGCGGTTGTGGTCAATGATGATGATGATGATGGGGATGGCTCTGATGTTGTTCAGCCACAAAAGAGAAAGAGACTCTGGGGTTTAGTAGTTTGCCATAACACTACTCCCAGGTTTGTTCCTTTTCCTCTGAGGTATGCTTGTGAGTTCTTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAATTAGAGTTAGAATATCAGATTATTGAGAAGAATATCCTGCGCACCCAAACACTCTTGTGTGATATGCTGATGCGGGATGCACCTCTTGGTATTGTATCTCAGAGTCCTAATATAATGGATCTTGTGAAATGCGATGGAGCAGCCTTATTGTATAGAAACAAAGTATGGAGATTAGGTGTTTCACCAACTGAATCTCAGATAAGAGAGTTAGCTATATGGCTCTCCGAGTGCCACAAGGATTCCACCGGTTTGAGTACCGATAGCTTGTCTGATGCAGGGTTCCCAGGGGCTGCTTCTCTTGGTGATATTGTATGCGGAATGGCGGCCGTGAGAATCGCCTCCACAGACTTAGTTTTCTGGTTTAGGTCACATACTGCTGCGGAAATCCGATGGGGTGGTGCAAAGCATGAACCTGGTGAAAGGGATGATGTTAGGAAGATGCATCCAAGATCATCCTTCAATGCTTTCCTTGAAGTTGTGAAGACAAGGAGCCTGCCGTGGAAGGACTATGAGATGGATGCTATTCATTCGTTGCAGCTAATTCTGAGAAATTCATTCAAAGATGCAGACAATATGGATATAAGCACAGCTGTTATTGACACAAGACTAAATGAATTGAAGATAGAAGGGATGCAAGAACTGGAGGCAGTGACAAGTGAGATGGTTAGGTTAATTGAAACGGCAACGGTGCCGATTTTGGCGGTTGATGTCGATGGGATGGTCAATGGATGGAATACAAAAATTGCTGAGTTGACAGGTCTTCCGGTTGAGGAAGCTATTGGAAAGAATTTACTCACACTGGTTGAGGATTTTTCAACAGAAAGAGTCAAGAACATGCTGGACATGGCACTGCAGGGTAAAGAAGAGAAGAATGTCCAATTCGAGATCAAAACACACGGTTTGAAGAGTGATTCGGGTCCTATCACCTTGGTAGTCAATGCATGTGCAAGCAGGAATCTGCAGAATAATGTTGTGGGAGTTTGTTTTGTGGCTCAGGATATAACTGCTGAGAAGACAGTCATGGACAAGTTCACCCGAATTGAAGGTGACTACAAGGCGATCGTACAGAGTCCAAACCCGTTGATCCCTCCAATATTTGGGACGGATGAATTCGGGTGGTGTTGTGAATGGAATCCAGCAATGACAAAATTAACTGGATGGAAAAGAGAGGATGTGATGGATAAAATGCTATTGGGGGAGGTTTTTGGGTCCCAAATGGCTGCTTGTCGTCTAAAGAATCAAGAAGCTGTTGTTAATTTTGGCATAGTACTTAATAATGCCATGACTGGGGTGGAAACTGAGAAGGCTCCTTTCGGTTTCTTCACTCGGGGCGGGAAGTATGTCGAATGTCTGCTTTCTGTGAGTAAGAAATTGGACATAGAGGGTGAAGTTACCGGAGTCTTCTGCTTCTTGCAAATAGCTAGCCCTGAGCTGCAACAAGCATTGCATATTCAGCGCCTATCTGAACAAAATGCCTTGAAGAGACTCGAAGCATTAACTTACATGAAAAGGCAGATTCGGAATCCTTTATGTGGGATTGTGTTCTCTCGAAAGTTGTTGGAGAATACAGAGCTGGGAACTGAACAAAAACAATTCCTGGACACCGGCACTCAATGCCAACGCCAGCTTAGCAAAGTTCTCGACGACTCGGATCTTGACAGTATCATTGATGGCTATTTGGATTTGGAGATGGTTGAATTCACTCTGCATGATGTCTTAGTTGCTTGCATGAGCCAAATCATGACAAGGAGCAATGCAATGGGCATCACAGTAATCAATGATGTTTCGGAGCAGATCATGACAGAAACCTTATATGGTGATGGCCTTAGGCTTCAGCAGGCCTTAGCTGACTTTTTATTGATTTCCATCAATTCCACACCAACCGGAGGTCACGTCGTCGTGGCAGCATCTTTAACCAAAGATCAGATAGGGAAATCGGTCCATCTGGCTAACTTGGAACTCAGCATAACACATGATGGTAGTGGTGTTCCAGAATCATTGCTGAACCAGATGTTCGGTCGCGGCGGCGTTCATGAATCGGAGGAGGGTCTTAGTCTGTTCATCAGCAGAAAGCTGCTAAAGCTCATGAATGGAGACGTACGCTATGTAAGGGAAGCTGGCAAATCATCTTTCATCTTAACAGCTGAACTTGCTGGAGGCCCTAAATTGAGGGCTTAA 3654 0.4532 MSASVDEIPNVVNGIDGDDDDDEEEDDDAAEIEKLQRKEKGLGERRRWFFIHLRKSRTKFGESGAEERFFDRHRLQGMQVVAEVLQVTTMSSSRPSQSSRSSNSGRSRHSARVIAQTTVDAKLHATFEESGSSFDYSNSVRLSSGTVSGDQQPRSDRVTTAYLHQIQKGKFIQPFGCLLALDEKTCRVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSAAALQKALGVPEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPNEVPMTAAGALQSYKLAAKAITRLQSLPSGSMETLCDTMIQEVSELTGYDRVMAYKFHEDDHGEVIAEVKKPGLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCRAKHVKVLQDPKIPFDLTLCGSTLRAAHSCHLQYMENMNSIASLVMAVVVNDDDDDGDGSDVVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYRNKVWRLGVSPTESQIRELAIWLSECHKDSTGLSTDSLSDAGFPGAASLGDIVCGMAAVRIASTDLVFWFRSHTAAEIRWGGAKHEPGERDDVRKMHPRSSFNAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKDADNMDISTAVIDTRLNELKIEGMQELEAVTSEMVRLIETATVPILAVDVDGMVNGWNTKIAELTGLPVEEAIGKNLLTLVEDFSTERVKNMLDMALQGKEEKNVQFEIKTHGLKSDSGPITLVVNACASRNLQNNVVGVCFVAQDITAEKTVMDKFTRIEGDYKAIVQSPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREDVMDKMLLGEVFGSQMAACRLKNQEAVVNFGIVLNNAMTGVETEKAPFGFFTRGGKYVECLLSVSKKLDIEGEVTGVFCFLQIASPELQQALHIQRLSEQNALKRLEALTYMKRQIRNPLCGIVFSRKLLENTELGTEQKQFLDTGTQCQRQLSKVLDDSDLDSIIDGYLDLEMVEFTLHDVLVACMSQIMTRSNAMGITVINDVSEQIMTETLYGDGLRLQQALADFLLISINSTPTGGHVVVAASLTKDQIGKSVHLANLELSITHDGSGVPESLLNQMFGRGGVHESEEGLSLFISRKLLKLMNGDVRYVREAGKSSFILTAELAGGPKLRA* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0722 1217 Gene3D - 291 654 IPR029016 -
Aev06g0722 1217 SUPERFAMILY PYP-like sensor domain (PAS domain) 856 962 IPR035965 -
Aev06g0722 1217 Pfam PAS fold 712 826 IPR013767 GO:0006355
Aev06g0722 1217 Pfam PAS fold 842 964 IPR013767 GO:0006355
Aev06g0722 1217 SUPERFAMILY PYP-like sensor domain (PAS domain) 715 822 IPR035965 -
Aev06g0722 1217 SUPERFAMILY PYP-like sensor domain (PAS domain) 166 279 IPR035965 -
Aev06g0722 1217 SMART gaf_1 310 503 IPR003018 GO:0005515
Aev06g0722 1217 SUPERFAMILY GAF domain-like 501 678 - -
Aev06g0722 1217 Gene3D - 1027 1204 IPR036890 -
Aev06g0722 1217 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1048 1202 IPR036890 -
Aev06g0722 1217 Pfam GAF domain 310 493 IPR003018 GO:0005515
Aev06g0722 1217 ProSiteProfiles PAS repeat profile. 842 894 IPR000014 -
Aev06g0722 1217 Pfam Phytochrome region 506 680 IPR013515 GO:0006355|GO:0009584
Aev06g0722 1217 Coils Coil 490 510 - -
Aev06g0722 1217 SUPERFAMILY GAF domain-like 290 490 - -
Aev06g0722 1217 MobiDBLite consensus disorder prediction 88 111 - -
Aev06g0722 1217 SMART pas_2 841 910 IPR000014 -
Aev06g0722 1217 SMART pas_2 711 777 IPR000014 -
Aev06g0722 1217 MobiDBLite consensus disorder prediction 1 30 - -
Aev06g0722 1217 TIGRFAM sensory_box: PAS domain S-box protein 716 832 IPR000014 -
Aev06g0722 1217 PANTHER TWO-COMPONENT HISTIDINE KINASE 90 1212 - -
Aev06g0722 1217 SMART HisKA_10 986 1051 IPR003661 GO:0000155|GO:0007165
Aev06g0722 1217 SMART HKATPase_4 1098 1211 IPR003594 -
Aev06g0722 1217 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1098 1209 IPR003594 -
Aev06g0722 1217 CDD PAS 853 964 IPR000014 -
Aev06g0722 1217 Pfam PAS fold 161 277 IPR013654 GO:0006355
Aev06g0722 1217 PANTHER PHYTOCHROME A 90 1212 - -
Aev06g0722 1217 Gene3D - 498 671 IPR043150 -
Aev06g0722 1217 MobiDBLite consensus disorder prediction 13 30 - -
Aev06g0722 1217 Gene3D PAS domain 165 413 - -
Aev06g0722 1217 Gene3D PAS domain 855 970 - -
Aev06g0722 1217 PRINTS Phytochrome signature 641 659 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 PRINTS Phytochrome signature 804 821 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 PRINTS Phytochrome signature 731 746 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 PRINTS Phytochrome signature 712 728 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 PRINTS Phytochrome signature 225 247 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 PRINTS Phytochrome signature 325 344 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 PRINTS Phytochrome signature 523 543 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 PRINTS Phytochrome signature 608 627 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 PRINTS Phytochrome signature 410 431 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 PRINTS Phytochrome signature 824 844 IPR001294 GO:0006355|GO:0009584
Aev06g0722 1217 ProSiteProfiles Histidine kinase domain profile. 993 1211 IPR005467 -
Aev06g0722 1217 ProSiteProfiles PAS repeat profile. 709 779 IPR000014 -
Aev06g0722 1217 CDD PAS 720 826 IPR000014 -
Aev06g0722 1217 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 310 483 IPR016132 -
Aev06g0722 1217 Gene3D PAS domain 703 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0722 Aev-Chr6 4961726 4970902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0722 90 1214 Histidine Kinase Gene Family AT1G09570 77.087 0.0 1819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0722 K12120 - gmx:100790763 1846.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0722 06 4961726 4970902 Aev06g0722 06 4961726 4970902 ECH
Aev06g0722 06 4961726 4970902 Aev09g1344 09 17251484 17256712 PCT