Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0664 ATGGTCAATTTCAATGGAGACCCTCATCCCCATCCCCATCCACAACCCTTACCCTTAGACAACAACCATTTCAACCAACCTTATAACGGCCACAACGCCAATGCCTTCCCCACCTATGATCATCACCAACAACACCATAACCATAACCACAACCACCAGTACCAATTCATCAACCCTCCCGATTCTGGATTACCTCCCAATAATAATAACAACAATAATAATCCCCAATCCATGCCTCGTCCACCTCGCAAACGAGCTTGGTCTTCAACTTCCCCAGATCAAGTGGATGGTGTGAAAGTTTATGTTGCGCCGGTTCCTAGAACAGCAACAGAGGCTGATGTCCGCCTTGTGTTCGAAGGACACGGGACTATTGTTGAGGTTGTTCTATTAAGGGATAAGAGAACTGGTGCACGACAAGGAAGTTGTTTTGTGAAATACGCAACATTTGATGAAGCTGACAGGGCCATTAAGGCTTTAAACAATCAGTATACATTTCCTGGAGAATTATGTCCTGTTGTTGTCAGATTTGCTGATCGGGAACTCGAACGCCTTGGGTTTGGCCGAAACATGGAAAAGAAAGATCATCCTTCAGAAGGGTTTGGCCGAAACGTGGAAAAGAAAGATCTTCTTTCAGAAGGGTTTGGCCGAAACATGGAAAAGAAAGATCATCCTTCAGAAGAGGTGCTGGCAGATAAAGTGTTTGTTAGTTTCATCAATAGAGAAGCTTCAAAAAAGGATATTGAAGAAATATTTTCAACTTACGGGAATGTAGAAGATGTTTTCATTGCGCAAAGTCGTGGGTATGCTTTTGTCAAGTTTTCTAGTAGAGAAATGGCACAGGCAGCAATCAAAGGGCTGAACAGAACGTTCACGATGAGAGGTTGTGATCATCCATTAATTGTGCGTTTTGCAGATCCAAAGAAACCTAAGACAGGAGAACCAAGGGGAAACTGTTTATCTGGGAATGCAAATTTCGGTCCCTGTTCTCAAGAACCGGCAGTTTGGCCAGTGCCGAATTTTGGTGATCCCAATATGCGAGGGAGTATGATGCCAATTGCTCCACATCATTCCACAATGCCACACCCACAAGTTGCTCCTAATATGCAGAATTGGCATCCTGGGGCCCCTATGGTACAACCGCCATTTCCTCCCCAGCAACCACATCCACAAATGGCTTCAATGCCTTGGCAGTCATTTCAAGCTCCAAAGTTATCTTCTCAACCATTTGTTACTGAGGTGCAGAGACAGTCACATCCAGCTGATTCTACAGTTCAAAATATGGACCAGCAGCTAAGTTCACAGCTGCCTACTCAGAGTGGAAGCAATTCTATTACTGTTGGTGGCACTGCGTCACCTGATATGCCTACAAGTCCCCAAGATGAAGAATTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCAGACGGTCATAAGTATTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAAAAGCCTGAGGAGTGTGCACTTGATGAGAAAGAATCACAGAAGCAGCAAGAACAGGAGGATAGTAGCTGTCTTATGTCACAATTATCGTTATCTTCCACCGAACAAGTTGCCCAAAGTCAACAGGAAACAAATCATGATCATGGGCAATCAGAAACAAGTCCTGTTGTTGCACAGGTGTGA 1653 0.4453 MVNFNGDPHPHPHPQPLPLDNNHFNQPYNGHNANAFPTYDHHQQHHNHNHNHQYQFINPPDSGLPPNNNNNNNNPQSMPRPPRKRAWSSTSPDQVDGVKVYVAPVPRTATEADVRLVFEGHGTIVEVVLLRDKRTGARQGSCFVKYATFDEADRAIKALNNQYTFPGELCPVVVRFADRELERLGFGRNMEKKDHPSEGFGRNVEKKDLLSEGFGRNMEKKDHPSEEVLADKVFVSFINREASKKDIEEIFSTYGNVEDVFIAQSRGYAFVKFSSREMAQAAIKGLNRTFTMRGCDHPLIVRFADPKKPKTGEPRGNCLSGNANFGPCSQEPAVWPVPNFGDPNMRGSMMPIAPHHSTMPHPQVAPNMQNWHPGAPMVQPPFPPQQPHPQMASMPWQSFQAPKLSSQPFVTEVQRQSHPADSTVQNMDQQLSSQLPTQSGSNSITVGGTASPDMPTSPQDEEFPECDWSEHYCPDGHKYYYNCVTCESRWEKPEECALDEKESQKQQEQEDSSCLMSQLSLSSTEQVAQSQQETNHDHGQSETSPVVAQV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0664 550 PANTHER RNA BINDING PROTEIN 84 527 - -
Aev06g0664 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 179 IPR000504 GO:0003723
Aev06g0664 550 Gene3D - 87 183 IPR012677 -
Aev06g0664 550 Pfam WW domain 466 493 IPR001202 GO:0005515
Aev06g0664 550 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 84 527 - -
Aev06g0664 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 291 IPR000504 GO:0003723
Aev06g0664 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 167 IPR000504 GO:0003723
Aev06g0664 550 SUPERFAMILY WW domain 467 496 IPR036020 GO:0005515
Aev06g0664 550 MobiDBLite consensus disorder prediction 402 456 - -
Aev06g0664 550 MobiDBLite consensus disorder prediction 50 93 - -
Aev06g0664 550 Coils Coil 498 518 - -
Aev06g0664 550 SMART ww_5 463 495 IPR001202 GO:0005515
Aev06g0664 550 MobiDBLite consensus disorder prediction 501 550 - -
Aev06g0664 550 ProSitePatterns WW/rsp5/WWP domain signature. 468 493 IPR001202 GO:0005515
Aev06g0664 550 SUPERFAMILY RNA-binding domain, RBD 69 186 IPR035979 GO:0003676
Aev06g0664 550 MobiDBLite consensus disorder prediction 19 40 - -
Aev06g0664 550 SMART rrm1_1 99 175 IPR000504 GO:0003723
Aev06g0664 550 SMART rrm1_1 232 302 IPR000504 GO:0003723
Aev06g0664 550 MobiDBLite consensus disorder prediction 509 550 - -
Aev06g0664 550 CDD WW 466 495 IPR001202 GO:0005515
Aev06g0664 550 Gene3D - 218 312 IPR012677 -
Aev06g0664 550 Gene3D - 451 514 - -
Aev06g0664 550 ProSiteProfiles WW/rsp5/WWP domain profile. 468 495 IPR001202 GO:0005515
Aev06g0664 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 306 IPR000504 GO:0003723
Aev06g0664 550 SUPERFAMILY RNA-binding domain, RBD 225 316 IPR035979 GO:0003676
Aev06g0664 550 MobiDBLite consensus disorder prediction 402 464 - -
Aev06g0664 550 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0664 Aev-Chr6 4550916 4556836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0664 19 380 Eukaryotic Initiation Factors Gene Family AT2G23350 21.522 1.58e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0664 K13207 - gmx:100776162 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0664 06 4550916 4556836 Aev06g0664 06 4550916 4556836 ECH