Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0593 ATGCTCTTAAACGAGCGTGACGGCGGGGTCAGACTTGGTCCTTCGTTGGAAGTCATCCCAGGCCATGAATTACGTGTGCGAATTGCGAAAGGAATGGTCATAGGGCCAAAACTTCGAGCACCGTCTGTCTCCGGCAGTGGCTTTAGCCTCCTACTAGGGTTTTTCTCCGTTCACCCCTCACTCTTCTTCCCTTTCGGAATCGCAACCACAAGGTCAAAGAAGATGACTGAAGTAAATGCAGGAACCGAAATCCCTCAGAACATGACCATCTACATCAACAACCTCAACGAAAAGATCAAGATTGACGAGTTGAAGAAGTCGCTGCACGCTGTTTTCTCTCAGTTCGGGAAGATACTGGAAGTGTTGGCTTTCAAGACGCTCAAGCACAAGGGTCAGGCTTGGGTTGTGTTTGAGGATGTTTCTTCTGCTTCCAATGCCCTTAGGCAAATGCAGGGTTTTCCCTTCTATGATAAGCCCATGAGAATACAGTACGCAAAGACTAAATCTGATATAATAGCCAAAGCTGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGCATGATGACAAAGGCAAAAAGCGGAAGGACCAACATGATCCTAATTTAGCTGGAATGGGCGTAAATCCAGCTTATGCTGGTGCCTATGGTGCAGCACCTACTATGCCATACCCAGGTGCTCCGAAATCTATGGTGCCTGAGGCTCCCGCGCCGCCAAATAATATTCTCTTTATTCAAAATCTACCGAACGAGACAACTCCCATGATGCTGCAAATGCTCTTTCTTCAGTATCCTGGTTTCAAGGAAGTTAGGATGGTGGAAACAAAGCCAGGAATCGCATTTGTGGAGTATGGGGATGAGATGCAATCCACAGTTGCAATGCAGGCGCTACAGGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTATGCCAAGAAATAG 948 0.4662 MLLNERDGGVRLGPSLEVIPGHELRVRIAKGMVIGPKLRAPSVSGSGFSLLLGFFSVHPSLFFPFGIATTRSKKMTEVNAGTEIPQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQHDPNLAGMGVNPAYAGAYGAAPTMPYPGAPKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0593 315 CDD RRM2_U1A_like 239 311 - -
Aev06g0593 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 160 IPR000504 GO:0003723
Aev06g0593 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 302 IPR000504 GO:0003723
Aev06g0593 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 241 315 IPR000504 GO:0003723
Aev06g0593 315 CDD RRM1_U1A_like 89 166 - -
Aev06g0593 315 Gene3D - 229 315 IPR012677 -
Aev06g0593 315 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 79 315 - -
Aev06g0593 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 167 IPR000504 GO:0003723
Aev06g0593 315 SMART rrm1_1 89 163 IPR000504 GO:0003723
Aev06g0593 315 SMART rrm1_1 242 311 IPR000504 GO:0003723
Aev06g0593 315 MobiDBLite consensus disorder prediction 179 205 - -
Aev06g0593 315 Gene3D - 82 176 IPR012677 -
Aev06g0593 315 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 79 315 - -
Aev06g0593 315 SUPERFAMILY RNA-binding domain, RBD 86 304 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0593 Aev-Chr6 4139847 4144464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0593 90 170 Eukaryotic Initiation Factors Gene Family AT4G34110 32.530 4.58e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0593 K11091 - gmx:100777062 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0593 06 4139847 4144464 Aev06g0593 06 4139847 4144464 ECH