Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0586 ATGAGTAGACGTGGGAGCAGGACAGTCTACGTTGGGAACCTCCCTGGTGACATCCGTGAAAGAGAAGTGGAAGATTTGTTCATCAAGTATGGACACATAACTCACATTGATCTCAAGGTTCCACCTAGGCCTCCTGGCTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGCCACCGGTTGCGGGTGGAGCCAGCACATGGTGGGCGAGGTCACTCATCTTCAAGGGATCGATATAGTAGTCACAGCAATGGTCGGGGTGGACGTGGGGTATCTAGGCGCTCTGAGTATCGTGTTCTGGTCACTGGATTACCTTCCTCTGCTTCGTGGCAGGATCTTAAGGATCACATGCGAAAGGCAGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGAGGCACTACTGGGATTGTGGATTACACAAACTATGATGATATGAAATATGCTATGAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTGCCAGGGCTTATGTTCGTGTGAGGGAATATGACTCAAGGCGGGACTCCTCCCGTAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGTCGCAGTCGCAGCCGTAGCCGAAGTTACAGTCAGGGCCGGAGCCCAAGCAAATCTCCAAAGGGTAAGTCTTCACAGCGTTCACCAGCTAAGTCTCCAGCAAGATCTGCTTCTCGATCGAGATCAAAGTCTCGGTCTTTATCAGGATATGGATTCTTGCTGCAAACTGGAAATTGGAAATTAGGAACTTGGTGGGATTTGGTACAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAACAAAGAGATCCTGGATTGCCATTTTAGAGCTGGATGTCTTGGCGTACTAAAAGCCCGAAAAGACGCAGCGCCAGCAGGAGCCCGAAAAGACGCAGCGCCAGCAGGAGCCCAAAAAGACGCAGCGCCAGCAGGAGCCCAAGTAGAAGCAGGAGCAGAAGCAAGAGTTTGTCTCGGTTCGTTATTACCCTCTTTGATTGATTACATTGCTTGCTCAGCTGTATTTAAGGAAGGTTTTTCTCTTGTATCTGATCTGTTCTTGGTGTTGCAGGTGAGCTCTGAGTGGATGAGGGTGTTTTCTAGCTACATCAGTTATTCTCGTAGTAAATTGACATTGGCCAAGTAA 1212 0.4818 MSRRGSRTVYVGNLPGDIREREVEDLFIKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAMKKLDDSEFRNAFARAYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSQGRSPSKSPKGKSSQRSPAKSPARSASRSRSKSRSLSGYGFLLQTGNWKLGTWWDLVQLPATQFVVEIGNKEILDCHFRAGCLGVLKARKDAAPAGARKDAAPAGAQKDAAPAGAQVEAGAEARVCLGSLLPSLIDYIACSAVFKEGFSLVSDLFLVLQVSSEWMRVFSSYISYSRSKLTLAK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0586 403 MobiDBLite consensus disorder prediction 73 107 - -
Aev06g0586 403 Gene3D - 2 109 IPR012677 -
Aev06g0586 403 Gene3D - 110 188 IPR012677 -
Aev06g0586 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Aev06g0586 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Aev06g0586 403 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 257 - -
Aev06g0586 403 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 257 - -
Aev06g0586 403 SMART rrm1_1 8 78 IPR000504 GO:0003723
Aev06g0586 403 SMART rrm1_1 112 181 IPR000504 GO:0003723
Aev06g0586 403 CDD RRM2_SF2_plant_like 111 186 - -
Aev06g0586 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Aev06g0586 403 MobiDBLite consensus disorder prediction 187 252 - -
Aev06g0586 403 MobiDBLite consensus disorder prediction 73 108 - -
Aev06g0586 403 MobiDBLite consensus disorder prediction 213 252 - -
Aev06g0586 403 SUPERFAMILY RNA-binding domain, RBD 6 179 IPR035979 GO:0003676
Aev06g0586 403 CDD RRM1_SF2_plant_like 8 78 - -
Aev06g0586 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0586 Aev-Chr6 4092806 4096841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0586 8 201 Eukaryotic Initiation Factors Gene Family AT4G34110 25.581 1.76e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0586 K12890 - gmx:100789847 338.576