Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0558 ATGGAGTTGTACGGTCGCAACCCGGCCAGAAACGGGTCAAACCCCGGGAATCAACCCGAATGGCGCTCGCCTGGCCCTGATACTGGTCTCGAAGAATCGATGTGGCAGTTGACGCTGGGAGGTGGTGGCAGCGAATCGTACCCGGAGCGACCTGGTGCTCCGAATTGCGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTGGAAGGTGCCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCTGTAAGAGCTACAGGGGAGTACCCAGAAAGAGTGGGGGAACCTCCATGTCAGTACTATTTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTCCACCATCCGAAACATGGAGGTGGTTCTTTAAGCCAAGCACCTCTAAATATTTACGGATACCCATTACGGCCGGGTGAGAAAGAATGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACGTCATTGCCAACATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTCTGCCCGAACAATATGGAGGAGCATCCACTAGCTTGAGAGTGGCTAGGCCTCCTATATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCTGGGGTTGTTCCATTTCCCGGATGGAATCCTTATTCGGCACCTGTAAGTCCCGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCTACATCTCTATATGGAATGTCCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCTTTGCCCTCTTCGGTTGGCCCTTCAGGCAGTAGCCAGAAGGAACAAGTATTTCCTGAAAGGCCTGGTGAACCTGAATGCCAATATTTTCTGAGGACAGGGGACTGTAAATATGGATCAGCTTGTCGATATCATCACCCTAGGGACAGGGTTGTGACACGGCCACTTCTCAGCCCCATTGGTCTTCCACTACGTCCGGGGGTTCAACCTTGTGCATTTTATTTGCAAAACGGGCATTGCAAGTTTGGCTCCACATGCAAATTCGACCATCCTTTCGGGCCTGTGAGATATAGTCCGTCAACGTCTTCCCTGACGGAAATGCCAGTTACTCCATACCCAGTTGGGTCTTTGCTGTCTACCCTGGCTCCTTCATTAACATCCTCAGAGCTTAGGCCTGAATTGATGTCAGGGTCCAAAATGGAATCCTTTTCAACCAGAATGCCTTCTTCTGGAAATAGTTCCAGTAGTTCTTCTCTCAGCTTAATTCTTCCACAAGCTGGATCTGTCTCAACACAGAGTTCTTCTTCTGCCCCTCTAAGCAGTAGCCGAAGCACCAGATAA 1392 0.4928 MELYGRNPARNGSNPGNQPEWRSPGPDTGLEESMWQLTLGGGGSESYPERPGAPNCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPTSAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPILPGSYVQGAYGPVLLSPGVVPFPGWNPYSAPVSPVLSPGAQPAVGATSLYGMSQLSSSTSAFARPYTPLPSSVGPSGSSQKEQVFPERPGEPECQYFLRTGDCKYGSACRYHHPRDRVVTRPLLSPIGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPFGPVRYSPSTSSLTEMPVTPYPVGSLLSTLAPSLTSSELRPELMSGSKMESFSTRMPSSGNSSSSSSLSLILPQAGSVSTQSSSSAPLSSSRSTR* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0558 463 SUPERFAMILY CCCH zinc finger 344 373 IPR036855 GO:0046872
Aev06g0558 463 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Aev06g0558 463 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Aev06g0558 463 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Aev06g0558 463 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Aev06g0558 463 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Aev06g0558 463 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Aev06g0558 463 MobiDBLite consensus disorder prediction 405 463 - -
Aev06g0558 463 MobiDBLite consensus disorder prediction 279 298 - -
Aev06g0558 463 MobiDBLite consensus disorder prediction 279 293 - -
Aev06g0558 463 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Aev06g0558 463 SUPERFAMILY CCCH zinc finger 55 79 IPR036855 GO:0046872
Aev06g0558 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 168 IPR000571 GO:0046872
Aev06g0558 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 53 77 IPR000571 GO:0046872
Aev06g0558 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 325 IPR000571 GO:0046872
Aev06g0558 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 369 IPR000571 GO:0046872
Aev06g0558 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872
Aev06g0558 463 Gene3D - 287 371 - -
Aev06g0558 463 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Aev06g0558 463 Gene3D - 128 176 - -
Aev06g0558 463 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
Aev06g0558 463 SUPERFAMILY CCCH zinc finger 143 169 IPR036855 GO:0046872
Aev06g0558 463 MobiDBLite consensus disorder prediction 1 32 - -
Aev06g0558 463 SUPERFAMILY CCCH zinc finger 302 327 IPR036855 GO:0046872
Aev06g0558 463 Gene3D - 49 127 - -
Aev06g0558 463 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 17 453 - -
Aev06g0558 463 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Aev06g0558 463 PANTHER PROTEIN PHOSPHATASE RELATED 17 453 - -
Aev06g0558 463 SUPERFAMILY CCCH zinc finger 98 122 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0558 Aev-Chr6 3905951 3910371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0558 1 437 C2H2 Transcription Factor Family AT5G18550 51.957 7.78e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev06g0558 zf-CCCH 2.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0558 - - lja:Lj5g3v1665190.1 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0558 06 3905951 3910371 Aev06g0558 06 3905951 3910371 ECH