Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0549 ATGGAAGAGTCTTCACCCACCTCAGCTCAAACTGAAACCAGAGCGGTCTTCGGGAAATTGCAGTTCGGATGCGAACACTACAAGAGACGATGCAAAATTCGTGCTCCCTGCTGCAATCAGATCTTCCCTTGCCGTCACTGTCACAACGACGCCATGAGCTCACTTAGCAACCCCATGGAGCGTCATGAACTTGTTAGGCAAGATGTTAAGAACGTTGTATGTTCTATCTGTGATACTGAGCAAGAGGTTGCCAAGATGTGTTCTAACTGTGGCGTCAACATGGGAGAATATTATTGTGATATTTGCAAATTCTATGATGATAATACGGAAAAAGGACAATTCCACTGTGATGAATGTGGGATTTGCAGGGTTGGTGGTCGTGATAACTACTTTCACTGTCAAAAATGTGGCTCATGCTATTCAGTGGGCTTGCGAAACAACCACTTATGTGTAGAGAACTCAATGAAGACTTTCTGTCCTGTCTGTTATGAGTATCTATTTGATTCAATAAAAGGCACCACAATTTTGGGGTGTGGTCACACGATGCATTCAGAATGCTATCAGGAGATGGCAACACAAAATCAGTATCGTTGTCCTATCTGCTCGAAGACCATATTTGACATGTCTGAAAGCTGGGAACATTTAGATCAGGAGATTGCAGCTGTTCCCATGCCTGAAGAATACAATGTTGAGGTAGTTACTTCTCTATCTGATTCTCTCTTGACTGGTCGATTCATTGGAATTGTGTTGTCTATGTCATCTTTGAGCTTGGGATTCTTTCACGTTGACTTGGACGGACCCTGGTTCATGAACACAAGAAGCATGCCTGCCATGCCAGCGGTGAGGGAGAGACGAGAAACTTGTGCATACGGTGGACCTTTGAATCCTTACAACACGTAG 900 0.4411 MEESSPTSAQTETRAVFGKLQFGCEHYKRRCKIRAPCCNQIFPCRHCHNDAMSSLSNPMERHELVRQDVKNVVCSICDTEQEVAKMCSNCGVNMGEYYCDICKFYDDNTEKGQFHCDECGICRVGGRDNYFHCQKCGSCYSVGLRNNHLCVENSMKTFCPVCYEYLFDSIKGTTILGCGHTMHSECYQEMATQNQYRCPICSKTIFDMSESWEHLDQEIAAVPMPEEYNVEVVTSLSDSLLTGRFIGIVLSMSSLSLGFFHVDLDGPWFMNTRSMPAMPAVRERRETCAYGGPLNPYNT* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0549 299 ProSiteProfiles Zinc finger RING-type profile. 159 202 IPR001841 -
Aev06g0549 299 Pfam Ring finger domain 159 201 IPR001841 -
Aev06g0549 299 ProSiteProfiles Zinc finger CHY-type profile. 17 92 IPR008913 GO:0008270
Aev06g0549 299 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 17 238 IPR031109 GO:0008270|GO:0016567
Aev06g0549 299 SMART ring_2 159 201 IPR001841 -
Aev06g0549 299 SUPERFAMILY Zinc hairpin stack 95 152 IPR037275 -
Aev06g0549 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 228 IPR013083 -
Aev06g0549 299 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 17 238 - -
Aev06g0549 299 Pfam CHY zinc finger 24 104 IPR008913 GO:0008270
Aev06g0549 299 SUPERFAMILY RING/U-box 158 207 - -
Aev06g0549 299 SUPERFAMILY CHY zinc finger-like 20 93 IPR037274 GO:0008270
Aev06g0549 299 ProSiteProfiles Zinc finger CTCHY-type profile. 94 158 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0549 Aev-Chr6 3868873 3871962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0549 22 229 C2H2 Transcription Factor Family AT3G18290 42.523 2.92e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0549 K10144 - gmx:100818374 399.823