Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0548 ATGGGTGGTTCTCCAGAAAGACACTCTGCATACAAAGAACATGAAGATAAATCATCGTCATGCGACTATTGTAGCAACTCAAGAGCAGTTCTATATTGCAGAGCTGATTCAGCGAAGCTCTGTTTCTCATGTGACCGTGAAGTTCACTCCACGAACCAGCTCTTCTCGAAGCACACTCGTACTCTGCTATGTGACTCCTGCAACGATTCCCCTGCCTCCATACTCTGTTCTACAGAGTCCTCTGTTTTGTGTCAGAATTGTGACTGGGAAAGGCACAACCTTTCGCTCTCCACTGTTCACGAGAGAGGTCCCCTTGAAGGATTCACTGGGTGTCCCTCGGTTTCAGAGCTCTTAACGATTGTGGGGCTCGAAGATATTGGGAAAAAATCTCTGCTTTCGGATGAGGGGAGTGATGGTGTTAATAGTGATGGATTTATGGGGTGTGAGATTGAAGGGATTTCTGATTTGCTTGTTTGGGATGCTCCTTCTGTTGTTAGCCTTGACGATTTGATTTCTTCTTCTGCTTCTTCACATAACTATCAGGCTATGGAGGTTCCTCCTCTGCCCAAGAATCGTAAGGCTGCTTGTGGGAGACACAAAGAAGAGGTTCTTAGCCAGCTTCGTGAACTAGCAAAGTCTGAGCCATTAGATCTTGAACAACAACAATATGTGCAATCGGGGAATTTGTCCACTGAGATTGAACGTGTCTCAAAAAAATCTGATATATTTCCTTCTTATGAGTGGCACAGAGAAAGAAATGAGCCTATAAATCAAGTAGTTCCTTCAGATATGTCATTGGGAGGTTATGCAGAAGAAGAATTTGCAGCTAAAAATTCAACTTGTGCTGTTTGGGAGACTCATAATCATGCCTATGCCAGTAATGATGCGAATCCACCACATATGTCTCTCCAATCTGAAACTTTACCAACTACCCCCAAAGCTGCACCGTGTGAGTTAACAAGTCAAGAGAGAGATTCCGCATTGTTACGGTACAAGGAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGGTATGAATCACGAAAAGTTAGAGCACAAAGCAGGGTCAGAGTTAAAGGCCGATTTGCCAAGATGGAACACTGA 1107 0.4372 MGGSPERHSAYKEHEDKSSSCDYCSNSRAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDSCNDSPASILCSTESSVLCQNCDWERHNLSLSTVHERGPLEGFTGCPSVSELLTIVGLEDIGKKSLLSDEGSDGVNSDGFMGCEIEGISDLLVWDAPSVVSLDDLISSSASSHNYQAMEVPPLPKNRKAACGRHKEEVLSQLRELAKSEPLDLEQQQYVQSGNLSTEIERVSKKSDIFPSYEWHRERNEPINQVVPSDMSLGGYAEEEFAAKNSTCAVWETHNHAYASNDANPPHMSLQSETLPTTPKAAPCELTSQERDSALLRYKEKKKTRRYDKHIRYESRKVRAQSRVRVKGRFAKMEH* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0548 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 17 368 - -
Aev06g0548 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 17 368 - -
Aev06g0548 368 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Aev06g0548 368 ProSiteProfiles CCT domain profile. 324 366 IPR010402 GO:0005515
Aev06g0548 368 SMART bboxneu5 64 105 IPR000315 GO:0008270
Aev06g0548 368 SMART bboxneu5 16 63 IPR000315 GO:0008270
Aev06g0548 368 Pfam B-box zinc finger 63 103 IPR000315 GO:0008270
Aev06g0548 368 Pfam B-box zinc finger 18 61 IPR000315 GO:0008270
Aev06g0548 368 Pfam CCT motif 324 366 IPR010402 GO:0005515
Aev06g0548 368 ProSiteProfiles Zinc finger B-box type profile. 59 105 IPR000315 GO:0008270
Aev06g0548 368 CDD Bbox1_BBX-like 21 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0548 Aev-Chr6 3864629 3866362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0548 21 339 C2C2-CO-like Transcription Factor Family AT2G47890 41.925 6.22e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aev06g0548 CCT 1.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0548 - - gmx:100777428 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0548 06 3864629 3866362 Aev06g0548 06 3864629 3866362 ECH