Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0535 ATGGATGGGACTAGTAGCGCTCCCAACTCTTGGTCGACTACTACTCCTCGTAATAGCGCTACTGCCTTATCATCCTCATCATCGCCCTCCGCTAATAATCAACCTGGAAGTGGTGGTGAGAGAGATGGGTTGTATGATGAGCTGTGGCAGACATGCGCGGGAGCATCAGTGTATGTTCCTCGCAGTGGAGAGAAGGTGTTGTACTTCCCTCAAGGCCACTTAGAGCAGGTTGATGCATTTATTCAACACCAGCAAGATGGCCACATGGATATTCCTGTACAAAATATGCCTTCTAAGATCCTGTGTAGGGTTGTGTCTGTTCAGTTGAAGGCTGAATCTTACACAGACGAGGTTTTTGCTCAAGTTACTTTACTTCCAGAGCACAAGCAAGATGAAGTTAACTCTGAGGATACTATACCCATCAGAGTCAGAGACAGCGCTTACTCATTTTGCAAGATACTTACTCCATCAGACACAAGCACACATGGTGGACTCTCTGTTCCCAAGAGACATGCTATTGAATGCTTCCCTCCTCTGGACATGTCTCTTGATCCGCCAACACAAGAGCTGGTTGCAAAGGACTTGCATGGGTTTGCTTGGCAGTTTCGGCATATATATCGTGGTCAGCCAAAACGACACTTGCTTACTAGCGGCTGGAGCACATTTTTGAATGCTAAGAAACTTGCTGCTGGGGACACATGCATTTTCATTAGAGGAGAGAATGGAGAAATTCGTGTTGGGATTCGCCGCGCAATGAAACAACATAGCATTGCATCCACATCTTCATCTCTTATATCAGGTGATAGCATGCAACGGGGAATCTTGGCTACTGCTTATCATGCTGTTACCACAGGATCCATGTTCACTGTCTACTACCATCCTTGGACAAACCCCTATGAATATATCATTCCTGTGCAACGCTATCTGAAGTCTACTGAAATGAAATATTCAATTGGCATGAGAGTACAAATGCTGCTTGAAGTTGTAGAATCTAAAAGAAGATATGCAGGAACCATAATTGGTGTTGATGATATTGATGGAAGTAAGTGGCCTGGTTCAGATTGGAGATCTCTCAAGGTGCAATGGGACACCATACTAGATTCATATATGAATGCTGAAAGGGTCTGTCCTTGGTGGATTGAGCCCTTGGAATTTGCCAAGCAGAAAATGGAAAGGGACTTACAAGGTCAAGATTACAATGTCGTCGCTTCACCACAGCCGGCGCGAAAAAGATTATCATTAGCAGCTGCATTTCCCCCATCAAAGGTAATCCGTGACTCAAAGTTTGGGATGGAGAATCAGTTTCGGTTTCTTGTGCAAGACCCTATCCACCAATGTACTAGCAGTTCAATGTCAATTGCAATTGAAGACTTGACAACTTGTAGTTCAAATGTGAACTGCTCTGAATCTCAGGGATTGTCTTCTTCTTCTGCATCTAAAGATGAAAATGATGTTCCTTTAGGCCAACATGGCAGTCTTAGAACATACAAGCTTTTCGGCTTTCGCTTGTACGATAACCAGCCGGAGCTCCCTTCACCACAATTTGCAATAAACAAGATTCCAATTGCACTTTCCATTCCTCCAATGTCTCAGTCAAATCCATATGGAAAAATTCCGGGTGTTACTTCAGGGAACAAATGCAAGAAGTGCCGCTCTGTTAATAGTAGGAGTTGTACAAAGGTGCTTAAGCAAGGAACAGCACTTGGCAGAGCAATAGACCTCAGTCGTATTGCTGGATACTATGAACTCATCTCTGAGCTTGACTGTATGTTTGAGTTTGGAGGAGGCTTAATTGATGGAAGCAGTGGATGGCATGTGACCTGTATTGATGATGATGAAGATATCATGCTCTTAGGCGATTTTAAATGGCAGTTAAGTATTTAG 1884 0.4379 MDGTSSAPNSWSTTTPRNSATALSSSSSPSANNQPGSGGERDGLYDELWQTCAGASVYVPRSGEKVLYFPQGHLEQVDAFIQHQQDGHMDIPVQNMPSKILCRVVSVQLKAESYTDEVFAQVTLLPEHKQDEVNSEDTIPIRVRDSAYSFCKILTPSDTSTHGGLSVPKRHAIECFPPLDMSLDPPTQELVAKDLHGFAWQFRHIYRGQPKRHLLTSGWSTFLNAKKLAAGDTCIFIRGENGEIRVGIRRAMKQHSIASTSSSLISGDSMQRGILATAYHAVTTGSMFTVYYHPWTNPYEYIIPVQRYLKSTEMKYSIGMRVQMLLEVVESKRRYAGTIIGVDDIDGSKWPGSDWRSLKVQWDTILDSYMNAERVCPWWIEPLEFAKQKMERDLQGQDYNVVASPQPARKRLSLAAAFPPSKVIRDSKFGMENQFRFLVQDPIHQCTSSSMSIAIEDLTTCSSNVNCSESQGLSSSSASKDENDVPLGQHGSLRTYKLFGFRLYDNQPELPSPQFAINKIPIALSIPPMSQSNPYGKIPGVTSGNKCKKCRSVNSRSCTKVLKQGTALGRAIDLSRIAGYYELISELDCMFEFGGGLIDGSSGWHVTCIDDDEDIMLLGDFKWQLSI* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0535 627 CDD B3_DNA 149 250 IPR003340 GO:0003677
Aev06g0535 627 Pfam Auxin response factor 278 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aev06g0535 627 MobiDBLite consensus disorder prediction 1 37 - -
Aev06g0535 627 MobiDBLite consensus disorder prediction 1 43 - -
Aev06g0535 627 ProSiteProfiles PB1 domain profile. 556 627 IPR000270 GO:0005515
Aev06g0535 627 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 389 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aev06g0535 627 Gene3D - 148 252 IPR015300 -
Aev06g0535 627 PANTHER AUXIN RESPONSE FACTOR 387 624 - -
Aev06g0535 627 Gene3D - 552 627 - -
Aev06g0535 627 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Aev06g0535 627 PANTHER AUXIN RESPONSE FACTOR 37 389 - -
Aev06g0535 627 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 387 624 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aev06g0535 627 SMART B3_2 150 252 IPR003340 GO:0003677
Aev06g0535 627 Gene3D - 315 390 - -
Aev06g0535 627 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Aev06g0535 627 SUPERFAMILY DNA-binding pseudobarrel domain 143 281 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0535 Aev-Chr6 3801043 3806038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0535 26 623 B3 DNA Binding Superfamily AT1G59750 41.379 2.51e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aev06g0535 B3 6.3e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0535 - - lja:Lj1g3v4764520.2 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0535 06 3801043 3806038 Aev06g0535 06 3801043 3806038 ECH