Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0478 ATGGAAGAAGAGAGAAGAGAAGTGATTCCAAGGAGAAAGATGACATTGGAGTTGATTGAGGAAAAAAGCCTAAGAAAAGCTTGCTACAAGAAAAGACGCGAAGGGTTGTTAAAGAAGATGAAAGAGATAACAACACTTTGTGGCATTGATGCATGCATAGTTATCCACAGTCCAGACGAGGCAGTTCCAACAGTGTGGCCATCCCCTGATGTGGCTAAACATCTCATACAGAGGCTTCACAGCAGCATTCCTGAGTCAGAGCTTTACGTCTGCAAAAGGATGGTTGACCATCACTCTTTCATGTTGGAGAAGGTCAAGAGGATGGAACGTGCACTTGCAAGGCTCAAGGAGATCAATGAGGAGAAGCAAATGTCGCTTTTCTTCTATCAGATTCGTTATGAAGGTAAGCCTCTGTCTGATTTCACTCTTGATGAGGCCAAGCGTTTACTTCATTATGTCGATGAGAAATTAAAGCAAGTCAGGTTGAGAATTGGTCCTTCTCAAGAGATGCTTTCGGATCCTTATAATAATAATAGTGCAATGATGAGCAATTTTGGAGATTTGAATGATGGAAATGATTCCCTGATGTTGTCTTATGGCAATTTTGGAGATTTTAATGCTGAAAGTGGCATAGGGACGATGTTGCCCCAGAGTAGTAATTTTGGAGGTGAAAACAAATTAGGGATGTTGTTGACTACTCATAGTAATTTTGTTGTTGGAGGTCTTAATAGTGATTTGGGAAGTGCACCTCAAAATACTATGTTTCAAGTTCTCAATGCTGCACTTGATCGTGCAATATTGGCTGAAGCCATTGACAATAATTTTGGTGAAAATGATTTGATGGGGGTGCCTCAGTTCAGTTCAAGAGGCATCAATGGTGAAGAGAATTTGGAGGTTTTGTATGGAGGCTCTGCTACTGAAATCGGAGGCAGTAACAATTGGGGCCCTTATGGTATTGCAAGTGCAATTGGTCAGAATAATGGCATTGGAATTGATGACCACAATGATCAAAACTACAATGGGCCCATCAACCACATTACAGGGTTTCAACAATTCAATCCAAACAACTTTGGACCCAACAACAGCAGTGAAGCTGCCATGGGGGAGTTCAATGCCAATCTTTTTGGATCCAATGATGGAATAAACTAG 1149 0.4125 MEEERREVIPRRKMTLELIEEKSLRKACYKKRREGLLKKMKEITTLCGIDACIVIHSPDEAVPTVWPSPDVAKHLIQRLHSSIPESELYVCKRMVDHHSFMLEKVKRMERALARLKEINEEKQMSLFFYQIRYEGKPLSDFTLDEAKRLLHYVDEKLKQVRLRIGPSQEMLSDPYNNNSAMMSNFGDLNDGNDSLMLSYGNFGDFNAESGIGTMLPQSSNFGGENKLGMLLTTHSNFVVGGLNSDLGSAPQNTMFQVLNAALDRAILAEAIDNNFGENDLMGVPQFSSRGINGEENLEVLYGGSATEIGGSNNWGPYGIASAIGQNNGIGIDDHNDQNYNGPINHITGFQQFNPNNFGPNNSSEAAMGEFNANLFGSNDGIN* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0478 382 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 61 IPR002100 GO:0003677|GO:0046983
Aev06g0478 382 SUPERFAMILY SRF-like 11 102 IPR036879 GO:0003677|GO:0046983
Aev06g0478 382 Gene3D - 21 125 IPR036879 GO:0003677|GO:0046983
Aev06g0478 382 PANTHER MADS BOX PROTEIN 11 192 - -
Aev06g0478 382 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Aev06g0478 382 Coils Coil 101 125 - -
Aev06g0478 382 CDD MADS_SRF_like 11 96 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aev06g0478 382 ProSiteProfiles MADS-box domain profile. 9 57 IPR002100 GO:0003677|GO:0046983
Aev06g0478 382 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 11 192 - -
Aev06g0478 382 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Aev06g0478 382 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0478 Aev-Chr6 3461026 3462174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0478 11 201 Type I MADS-box Gene Family AT1G65300 30.244 9.22e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev06g0478 SRF-TF 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0478 - - gmx:106798339 150.599