Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0477 ATGGCGACACAAACCGTTTACCTTAAAGAACATGAAGGGATTGGCAACAATTCTGTTGGACAGTTGTCATCTGCAACTTCAGCACCATGGTGGAGTGCCTTTGGAACTCAGTATGGGGATTCTTGTGGCCAAATTAAACCCTTTTCGCTCGAACTTCCGGCCTATGTAGACCAAGCTGCCATTAAGCAATCAGCAAGAGGAGCTGAAAACATGTTGGGTAAAGGACATACAACTCAATTCACCATCTTTCCAGATGATTGTAAAATGTCCAGTGATGCACAAAAGCCTCAAGAAACCATGTCTCTGCAGTCACCACTTTCTGACACCAACACTCGATTTGAGCTAGGATTTAGTCAGCCGATGATCTGTGCAAAATATCCCTACATGGATCAAATTTATGGGCTCTTCTCACCTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCACTTAACATGACTTCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATCAGACGTCGGCAGTCTCGTGCCAAAGCTGTGCTTGATAACAAAATGACAAAACGTCGCAAGCCGTATATGCATGAATCACGACATCTCCATGCAATGCGCCGACCAAGGGGATGTGGTGGTCGCTTCTTGAACACAAAGAATTCTGATGATGGAAATGGTAAAAGTGGAAGCAAAGCGAACAAAACTGGTCGCGAACACTTGCATCCCTGTGGATCTCAGAGTTCTGAAGTGCTGCAATCTGAGGCCGGAACTCTGAATTCTTCAAAGGAGACCAATGGCAGCAGTCCAAATATTTCAGGGTCAGAGGTGACTAGCATGTATTCACGAGGTGGTTTTGATAGCTTTGCTGTCAATAATCATCTCGGCTCTGCTGTCCACTCTCTGGCAGACATGATAAATGGTGGGCATGGCATGATCATGCCCCCAAAATGGGTTACAGCAGCAGCCCTGAAACCATCAACTTTGTCTCTCTTTCCGTCCTCCATGGCTGCTGCTACAGCTTCTGTTTCTTCTTCCTCTATCTGCAACAGAATCTATAACCTCACTTTTACCCACACTTCCATTTCACTCACCACCAACTTCCCTCAACGACCCATATCCCATAAACCCCTCAATTTTAACCTCAAGGCCCAAAGTTTCAATCTTTTGCCTCTCTCACTTCATCGTCTTCACTCTCCTTGTGCTGCCTTTGATGGATTCGAAGTGGGTCATGACAGTGACAGCACAGAGCCCCAAGAAGACGACCCAGAAACAGGAACAGAAGCAGAAACCTCTGAAGAGTCAGAAAAAGAGGAAGAGCAAAAGGTGTCAGACTCAAGCGACTCTGCGAGGCTCTATGTTGGAAACTTGCCATATTCAATGACTTCTAACCAATTGGCTGAGCTCTTTGGAGAAGCTGGCACTGTGGTGTCTGTTGAGATCGTGTATGATCGTGTCACGGATAGAAGCAGAGGATTTGCATTTGTTACAATGAAGAGTGTTGAGGAAGCTAAAGAAGCAATCCGATTGTTCGATGGCTCGCAAGTTGGTGGCAGGACTGCTAAGGTAAATTTCCCAGAAGTGCCAAAAGGAGGTGAAAGGTTAGTAATGGGGCCTAAAATAAGGAACAACTACAAAGGTTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGGACTGACTTCACAGGGTCTTAAAGATGCTTTTGTTGAGCAACCAGGCTTGTTGGGTGCCAAGGTTATCTATGAGAGGGACTCCGGAAGATCTAGGGGTTTCGGGTTTGTCACTTTTCAAACTGCTGAGGATGTAGAGGCCGCTCTGAATGCCATGAATGGTGTGGAGATTGAAGGTCGACCGCTTCGATTGAATTTGGCTGCAGAGAGGGCACCTTCATCACCTCCAGTAACTGAGGAGAATGCAGGAAGTAATGTTGATAGCTCTGAACTGTTGTCTAGTGCCAGTACATAA 1971 0.4587 MATQTVYLKEHEGIGNNSVGQLSSATSAPWWSAFGTQYGDSCGQIKPFSLELPAYVDQAAIKQSARGAENMLGKGHTTQFTIFPDDCKMSSDAQKPQETMSLQSPLSDTNTRFELGFSQPMICAKYPYMDQIYGLFSPYGPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDNKMTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNSDDGNGKSGSKANKTGREHLHPCGSQSSEVLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGFDSFAVNNHLGSAVHSLADMINGGHGMIMPPKWVTAAALKPSTLSLFPSSMAAATASVSSSSICNRIYNLTFTHTSISLTTNFPQRPISHKPLNFNLKAQSFNLLPLSLHRLHSPCAAFDGFEVGHDSDSTEPQEDDPETGTEAETSEESEKEEEQKVSDSSDSARLYVGNLPYSMTSNQLAELFGEAGTVVSVEIVYDRVTDRSRGFAFVTMKSVEEAKEAIRLFDGSQVGGRTAKVNFPEVPKGGERLVMGPKIRNNYKGFVDSPHKIYAGNLGWGLTSQGLKDAFVEQPGLLGAKVIYERDSGRSRGFGFVTFQTAEDVEAALNAMNGVEIEGRPLRLNLAAERAPSSPPVTEENAGSNVDSSELLSSAST* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0477 656 MobiDBLite consensus disorder prediction 191 206 - -
Aev06g0477 656 MobiDBLite consensus disorder prediction 405 445 - -
Aev06g0477 656 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 159 213 IPR001289 GO:0003700|GO:0006355
Aev06g0477 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 550 628 IPR000504 GO:0003723
Aev06g0477 656 SUPERFAMILY RNA-binding domain, RBD 547 634 IPR035979 GO:0003676
Aev06g0477 656 SUPERFAMILY RNA-binding domain, RBD 443 523 IPR035979 GO:0003676
Aev06g0477 656 SMART rrm1_1 551 624 IPR000504 GO:0003723
Aev06g0477 656 SMART rrm1_1 448 521 IPR000504 GO:0003723
Aev06g0477 656 CDD RRM_HP0827_like 448 524 - -
Aev06g0477 656 ProSiteProfiles NF-YA/HAP2 family profile. 156 216 IPR001289 GO:0003700|GO:0006355
Aev06g0477 656 SMART cbf3 155 216 IPR001289 GO:0003700|GO:0006355
Aev06g0477 656 Gene3D - 156 218 - -
Aev06g0477 656 Gene3D - 536 635 IPR012677 -
Aev06g0477 656 Gene3D - 404 530 IPR012677 -
Aev06g0477 656 MobiDBLite consensus disorder prediction 636 656 - -
Aev06g0477 656 MobiDBLite consensus disorder prediction 238 273 - -
Aev06g0477 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 449 517 IPR000504 GO:0003723
Aev06g0477 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 552 622 IPR000504 GO:0003723
Aev06g0477 656 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 325 - -
Aev06g0477 656 MobiDBLite consensus disorder prediction 627 656 - -
Aev06g0477 656 MobiDBLite consensus disorder prediction 188 273 - -
Aev06g0477 656 MobiDBLite consensus disorder prediction 414 432 - -
Aev06g0477 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 447 525 IPR000504 GO:0003723
Aev06g0477 656 PRINTS CCAAT-binding transcription factor subunit B signature 159 181 IPR001289 GO:0003700|GO:0006355
Aev06g0477 656 PRINTS CCAAT-binding transcription factor subunit B signature 190 213 IPR001289 GO:0003700|GO:0006355
Aev06g0477 656 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 325 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0477 Aev-Chr6 3441209 3446478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0477 1 320 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.881 4.75e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aev06g0477 RRM_1 2.2e-15 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0477 - K08064 gmx:100527677 501.901