Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0473 ATGGATGAGATTGATGTTCCTCCCTTCTTCCTCTGCCCAATCTCACTCGAAATCATGAAGGACCCTGTAACCGTCTCCACGGGAATCACCTACGACAGAGAGAGCATCGAGAGGTGGCTATTCTCCGCCGCCAACAACACCACATGCCCTGTTACCAAACAGACCCTTATCACCACTTCAGAATATTGCACCCATCTCCTCACTCCCAACCACACCCTCCGCAGACTCATCCAAGCATGGTGTACAATGAACGCTTCTCACGGCATCCAAAGGATTCCAACTCCAAAGCCACCCGTCAACAGAACCCACATCGCAAATCTCATCAGAGACGCTTCTCGATCCCCCTCGATGCAGATCAAGTCTCTCCGAAAACTCAAATCCATCGCTTCCGGCAGCGAAATGAACAAACGCTGCATGGAAGCAGCCGGCGCTGTCGAGTTCTTGGCCTCTCTCGTCATGAACAACCACACTACTCTGCCTCCTCTCGAATCATCATCCTCATCCTCAGAGTTCGAACTGAAAGCGAGTCCAAGCGATGAAGCCCTGAACATGCTCTACAATCTTCACATATCAGAAGCAGGATTGAAGACTCTATTGGGATTCAAGAACGGAGAGTTCATCGAATCCTTAACAAGGGTGATGAAGAAGGGAACGTTCGAGTCGCGAGCATACGCAGTTCTCTTGTTGAAATCCATGACCCAAGTGGCGGATCCATTGCACCTTCTCCATCTCAAAACAGAGTTCTTCGTGGAATTAGTGCAAGTCTTGAAGGACCAGATTTCGCAGAAAGCTTCAAAAGCAACACTCCACACGCTGATCCAAGTTGTTCATTGGGGCAGAAACAGAGTGAAAGCAGTGGAATCAGGCGCTGTTTCGGTTCTGATAGAGCTTCTTCTTGATTCGAAGGAAAGGAAGCCATGTGAGATGATGCTGGTTCTGCTTGATTTGCTCTGCCAGTGTGCAGAGGGAAGAGCAGAGCTTCTTAGCCATGGAGCAGGGCTTGCCATAGTTTCGAAGAAGATTCTGAGGGTTTCTACAATGGGAAATGATAGAGCTGTGAGGATTCTTCTTTCAATTTCGAGATTCTCTGCTACGCCAAGTGTTCTTCAGGAGATGCTCAAGCTTGGTGTGGTGGCCAAACTGTGCTTGGTGCTTCAGGTGGACAGTGGGAACAAGGCTAAGGAGAAGGCACGGGAGATTCTGAAGCTGCATGCTAGATCATGGAAGGATTCTCCATGCATACCCACCAATTTGATTTCTGCATACCCGGCTTATGTGTGA 1281 0.4902 MDEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIERWLFSAANNTTCPVTKQTLITTSEYCTHLLTPNHTLRRLIQAWCTMNASHGIQRIPTPKPPVNRTHIANLIRDASRSPSMQIKSLRKLKSIASGSEMNKRCMEAAGAVEFLASLVMNNHTTLPPLESSSSSSEFELKASPSDEALNMLYNLHISEAGLKTLLGFKNGEFIESLTRVMKKGTFESRAYAVLLLKSMTQVADPLHLLHLKTEFFVELVQVLKDQISQKASKATLHTLIQVVHWGRNRVKAVESGAVSVLIELLLDSKERKPCEMMLVLLDLLCQCAEGRAELLSHGAGLAIVSKKILRVSTMGNDRAVRILLSISRFSATPSVLQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARSWKDSPCIPTNLISAYPAYV* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0473 426 SUPERFAMILY ARM repeat 112 391 IPR016024 -
Aev06g0473 426 CDD RING-Ubox_PUB 10 54 IPR045210 -
Aev06g0473 426 Gene3D - 96 411 IPR011989 -
Aev06g0473 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 423 - -
Aev06g0473 426 Pfam U-box domain 6 84 IPR003613 GO:0004842|GO:0016567
Aev06g0473 426 SUPERFAMILY RING/U-box 3 87 - -
Aev06g0473 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Aev06g0473 426 PANTHER WDSAM1 PROTEIN 1 423 IPR045185 GO:0061630
Aev06g0473 426 ProSiteProfiles U-box domain profile. 5 87 IPR003613 GO:0004842|GO:0016567
Aev06g0473 426 SMART Ubox_2 9 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0473 Aev-Chr6 3413997 3415277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0473 2 423 U-box Gene Family AT2G35930 57.981 3.39e-177 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0473 - - adu:107471540 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0473 06 3413997 3415277 Aev02g2070 02 22286389 22292315 PCT
Aev02g2068 02 22259354 22260679 Aev06g0473 06 3413997 3415277 PCT